HsaINT0187982 @ hg19
Intron Retention
Gene
ENSG00000187815 | ZNF642
Description
zinc finger protein 642 [Source:HGNC Symbol;Acc:24708]
Coordinates
chr1:40955201-40962015:+
Coord C1 exon
chr1:40955201-40955296
Coord A exon
chr1:40955297-40960592
Coord C2 exon
chr1:40960593-40962015
Length
5296 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTTTTTTTCATTTCTTTCAGACT
3' ss Score
10.99
Exon sequences
Seq C1 exon
GATATCAACTTTCCAAACCTAGTGTGATATCCCAGTTAGAGAAAGGAGAAGAGCCATGGATGGCAGAGAAAGAAGGCCCAGGAGATCCCAGTTCAG
Seq A exon
GTGAGACCAAGTGTGTTAGTCTGTTTTTGTGTTGCTATAAAGGAATACCTGAAACTTCATAATTTATAAAGAAAAGAAGTTTAATTGGCTAATGATTCTGCAGGCTGTACAGGAAGCATGGCACTGGCATCTGCTCCTGGTGAGGGCCTCAGGAAACTTACAATCATGGTGAAAGGCATATCACATGGTGGGAGCTGGAGCATGAGAGTGAAGGAGGAGGTGCCAGGCTCTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCACTGTCGCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCCGCCTCTGGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGTTATGCGCCACCACGCTCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGATGGTCTTGATCTCGACCTTGTGATCTGCCCACCTCGGCCTTCCAAGGTGCTGGGATTTCAGGTGTGAGCCACTGCGCCAGGCTGGTGCCAGGCTTTTTAAACAACCAGATCTCATGTGAACTCAGAGTGAGAACTCATTACCATGGGGAGGACACTCATTCATGAGTGATCCACCCCCATGACCCAACACTTCCCACCAGGCCCCACCTGCAACACTGGGGATCACATTTCAACATGAGATTTGGAGGGGATAAATATTCAAACCAAATCACCAAGGCAGATGGAATTTTAATATGTAGGTCAGAGTGCTCAAAGCCTCGGCTGTGGGGAGGGCTCAGACCACTGGACAGAGCCTCCACTAAACTAATATCACCCGTCCCTTCCTTACCCCTTTCCTTCACTGAGCCCTTGCAAAAGTCCCCTGGAGTTGGAGGAAAGAGCAGTCTTGTCCTCATTAAGGTTGAGCTGGATTTTCCCTTTCTCCAGTATCCTAAGGGCTGCCAATCTAAAGCTTTCTCTAAGCAGTCAAATGTATGTGGTATTTTCACAGAAAACCAATCTCTTTCCAAGACTCCCATTGCATTCTACAAATCTTTAATTTTCCTGCACTCCATTTTTACTTCTTGCCAATGTTCATTTTACAATTCCAGCTTCGATTCTCATTCTCTTTTTAACTTATGTATCTTTTTTGTAACAGCTACTTATGAAAACTCCTGTAAGAGAAATTACCAAAGGATTCCTTCTCAACCAAATGTCGGGGTCCCTAACAATCTCCTCAAACTTTGCTTTTTATTCTGAAATATTTTAGACACTCAGAAAGGCATAGAAAACATTATAACACATTTCTGTGTAGCTTCCACCTAGACTAAGAAATGAAACACAGTTGAAGCTCCACTGTCCCCCTTACACCTTTTGAAATAAGCACTCTGCATTGAAATATTATTCCCATGTCTTCGTGCTTTTATTACATGTATAATGTAGTAAAAGCAGTCTATATATCAGTGTATACATACTAAACAATATATAGCATTGTTTTGCATGTTCTCTTTCTTTAAATAAATGGTATATATACTTCTTCCTTTTGCTTTTCTCATTCAACACTGGTGATATTCCTCAGTATGTTATTCTAGTTCATTCAATCCATTGAGTTAATAAACCACAATGTTCTTATTCATTTTCCTGTTGATAGACATTTACATTGTTTCCAAATTTGGGAGTTACAAAGATGCTACAGCAAACCTTTGTGTACATAACTTCTTGTATACATAATGCAAGTGTTTCTCTAAGATAGCTGGTAGAAGCAAAATTGTTGGGTTGTAGAATATATGCACTTTCATTTTGCTAGGTATTACCAATTTGCTCTTCAAAGCAGTTACACCAGGTTATTCTCCCATTAACAGGGTTTGAGAGTTTCCATAACTCAGCATCTTTGTCAACATTTGTTATTGTCAAACTTTAAGATTTTTGTAAATTCACTGGGTTATGGTATCTTGTTTCTTTCATTTTCCTGATTACCAGTGAAAGGAAGTATATTTCTCATGTTCATTGACCATCCATCCATCTCTTCTTCTGTCCTTACTCTAATGCCAGGCTCTTCTGTTAATTACCTGTTTATATCCCTTGCCAATGTTTCTATAATCTTTTTTTCTTATTGATTGGTAGAAAAAAATGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTATATATATATATATTCATTCTAGTATAATTATACATATATTCATTCTAGATAATAATCCTTGATAGCTTTATGTTTTGCAAATGTTTACTCTAGGTCAGTGGCCCATCTTTGACTTTTCAAAATTAGTGTCTTTTGTTAGACGTGAGTTTCTAAATTTAATGTTACTGAATTTATCAGGATTTTCTTTATTGTTTGTGCTTTTTAAGAAACCCTTTTATGCCTTATTATTCTTTTTTGTAAACTTTTTAAATTGTTTTTAGAGACTGGGTCTTGCTATGTTGCCCAAGCTGGCCTCGAATTCCTGGGCTCAAGTGATTCTTCTGCCTCAGCTACCTCACCTACTAAAGAGGCTGAGGCAGGACTACAGGTGCATGCTGCTGTGCCCTGCTATCCTCCATTTTATCATATATGTGGATCATACATATATGTTTTTACATATTCCTGTATTTTCAAAGTTTTGCTTTCCACATTTAGGTTTAATTCATCTGGAATTTATTTTATATAAATAAATTTGTATGTATGAGGTGGAAATCTGATTAACTTTTTCCACATGGATAATCAGTCCAGGAATAGTTAATGCTGCTCTGTCACCTGTCAAGTTTCTTTATATGTTTGGGTCTGTTTCTGTTTTGTATATTCTTTTTCTGTCGTGTTTCTCTCTTTATGTTGTTTTATTCTTTTGTTTTTCTGTCCTTACTCTAATGCCAGGCTGTCTTAAAAACTGTATCTCATAATGAGACTTAATATGTGGTAGAGGTAGTTCACCCACCTTGTTCTTTAAAGTTGTTCTGGTTATTCTTGGATCCTTGTTGTTCTATTTGAATTATATAATCAGAGCATCAAATCACACCCACAAATACTCTGCTGGCATTTTGATTGGAATAGAATTGAATTTCTAGATCAATTTTGGGGGAGTTAACATTGTTATGCTATTGAATCCTTCCAGGAATATGATATAGCACTCCATTTATTGATATTTCCTAATTTTTTTCAGTAACATTTCAGGATTTTCTCCTGTACATATTGTACATTTTTTGTTAGATTGATTCTGAAAATCTTATATTTTGTTGCTACTGTAGATGGTATTTTTTTTCCTTTTCTTTTCCCTGAGCCTCAGTCGTGAACAGGTATATTTTTAAAGAAAGATTATGTTGCTGGCCAGGTGCGGTGGCTCATGCCTATAATCCCAGCATTTTGGGATGCTGAGGCGGGCAGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGTGAAACTCCATCTGTACTAAAAATACAAAATTAGCCAGGTGTGGCGGTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCAAGATCACGCCGTTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCTGTCTCAAAAAAAAAAAAAAAAAATTATGTTGCTAGTAAGTAATAACAAAATTGATTTTGAATATTGACCTTTTATACAGCCACCTTGTTTTACTCTTATTAATTCCAATCACTCTTTGTATATTTTCCTGGGTTTTCTCTTCCTCAACTTACAATAATGAAAATAATAATAAAAGCTACCATGAATGTTCTTTCCCAGCCTCTGGATGAAATCTCAAAGAGTTCCATTGATGATCCCGTTCCTTTAAATAACAAGAACAGTCTTGACTTTAGTAAAATGCCTATTTAGTTCAGTGCAATAATAAAAACTCCCAACTTCATTCAAAACTAAACCCTCTCTTCTTCCCCACTAGCTTGACACTCCCTCATGCTCGGATACTGAATTAGGGAGGGATGCATAAATGGCTTCTTTTCTTTTCCCCCATCATCTTCTTTTCCTCCTCCGCTATTCAAGACCAGAATCAGGGACCTGCAGAGCATAGATATTATTAGACATTATTATTGCCTGTTGTCATTTAGAATTTGACATTTTGAATTGCTAATGATCCATCTGTGTTGGCTAAAAAAAATCTTATAAGAAATTAAACCTTTCAGGAATACATAAAGACCTGTCAGTTGAAATATTAGTAATGGTGCAACAAATTTATCAAGTAAAAATCTTAAAGGTTAAAGGGTATTTTCCTAGAACCTAGCAGCAGTAACAGCATAGCAATCTGGGTTTCTTACAAGTCTCCTTTGTATAAGTAATACTTCCATGAACATATTAATAACTATAGAAAGAGAAATATATATATATACACACACACAAGTTTCAATAAAAGACAGCATAATGTTCTTGTGTGTATTCTTAGTTCAAACTGTATTTTCTGAACGAATGTCTCCTGCTGCTGCCAGAGTGGGGAGGGAAACATCTTCCTTTTATCTTTCTGAGATTGTTTTCCAAAAGTAGTTGTCAATTAAAAATACTTATATTCTTAAGTCATAGCTCTGAAATTTTATTACTTAGTATTATTAGAGCAGGACTAAAAGATTCAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACTACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCAAATATTTATATGATATTTATAAATATTTGATATATTTATAAATATTTTATATATAAAATATACATTATATATAAAATATATATTTATTTATATTTATATATTTATAAATATTTGGTATATAAAATATACATTATATATATATAAATATATATCAAATATATATATATATATAAAATGACACTTTTAACCTGTTCACTGTTTCTTAATTTCCTTTCCCATTACCTCTCCAAGCAGCATAATCATATTTAAATATAGTCAAAATCTCATGCACTTATCCATATTGTTGTCTAAATCTCTGTTCCATAACCACTACAGTAATTGGTTTTTAAAGCTTTTTTTCATTTCTTTCAG
Seq C2 exon
ACTTGAAGAGTAAAATAGAAACCATTGAGTCAACTGCAAAGAGTACCATTTCACAGGAGCGCTTATATCATGGCATTATGATGGAAAGTTTCATGAGGGATGATATAATTTATTCCACGTTGAGAAAAGTCTCCACATATGATGATGTCTTAGAAAGGCACCAGGAAACTTGTATGAGAGATGTGAGACAAGCCATCTTGACCCATAAGAAGAGAGTCCAAGAAACTAACAAATTTGGGGAAAATATCATTGTGCATTCAAATGTTATTATTGAACAGAGGCACCATAAATATGATACACCTACAAAGCGGAACACATACAAATTAGATTTGATTAATCATCCAACAAGTTACATAAGAACAAAAACCTATGAATGTAATATATGTGAAAAAATCTTCAAACAACCTATTCACCTTACTGAACATATGAGAATTCATACTGGTGAGAAACCTTTCAGATGTAAGGAATGTGGAAGGGCCTTTAGTCAAAGTGCATCCCTCAGTACACACCAGAGAATCCATACTGGTGAGAAACCCTTTGAATGTGAGGAATGTGGGAAAGCCTTCAGACATCGCTCATCACTTAATCAGCATCATAGAACTCACACTGGGGAGAAACCCTATGTATGTGATAAATGTCAGAAAGCTTTCAGCCAGAACATTAGCTTGGTTCAACATTTGAGGACTCATTCTGGAGAGAAACCTTTTACTTGCAATGAATGTGGGAAAACCTTTAGACAGATTAGACACCTTAGTGAACATATAAGAATTCATACCGGGGAGAAGCCCTATGCATGCACTGCATGTTGTAAAACCTTTAGTCATAGAGCGTATCTAACACATCACCAGAGAATCCATACTGGGGAGAGACCCTACAAATGTAAAGAATGTGGAAAAGCCTTTAGGCAGAGGATACACCTTAGCAACCATAAAACTGTTCATACAGGAGTGAAAGCATATGAATGCAACCGCTGTGGAAAAGCCTATAGGCATGATTCATCCTTTAAAAAACATCAGAGACATCACACTGGAGAAAAACCTTACGAATGTAACGAATGTGGAAAAGCCTTCAGCTATAACTCTTCACTTAGTCGACATCATGAAATACACAGGAGGAACGCCTTCCGAAATAAGGTGTAAAAACAGATATTTGACTTGAGAACAAAAGCCAAGTGTAAATTGGTGATTTAGAGTGCTTTAAAATTTCAGGACTCAGATATGAGGAATTGATGTAATGATGCCAACTTTTAATTTTTCCCATTGTAAATAAACATTACATTGACAGGTATTGACTACTAACACCTCTAAAAAGTACTTAAGATTAAAATCTGGTCCTTAAAATTAAATGAATTCAGCATTATGAAAAATTCATAACAGTTTTTTTCTGATTTCATGGTGGATTAATAAATTATTCTTCATGGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187815-ZNF642:NM_198494:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.606 A=NA C2=0.129
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)