BtaINT0164397 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039287 | ZFP69
Description
Bos taurus zinc finger protein 642 (ZFP69), mRNA. [Source:RefSeq mRNA;Acc:NM_001102063]
Coordinates
chr3:106259858-106265184:-
Coord C1 exon
chr3:106265086-106265184
Coord A exon
chr3:106261210-106265085
Coord C2 exon
chr3:106259858-106261209
Length
3876 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATTTTTTCCATTTCTTTCAGACT
3' ss Score
9.9
Exon sequences
Seq C1 exon
CAGGTTGTCAGCTTTCCAAACCTAGTGTGATTTCCCAGTTGGAGAAAGGAGAAGAGCCATGGATGACAGAGAAAGAAGGCCCAGGAGATCCCAATTCAG
Seq A exon
GTGAGCCAAGGCAGATGGTGCCTTTTAATATGTAGGCCAGAGTGCCCAGCATCTTCCCAGGCTGCGGAAAGGCTGATCGGGTGGACAGGCATGCTCTGAACTAGATTTCATCCCTCTGTCTGCAGTCCTTTTCTTCATCTGACCTAGCAGAAGTCTCTGGAGTTGGAGGGGAGATAAGTCTTCTCTTCATTAAGGTTTTCCTTCTTTCTTCAATATCCTAAAGTCTGCCAATCGAAAGCTCCTTTCCCCATGCTCTGAGATGTACGTAGTAGTCTCTTCTCACAGAAAGCAGATCTCTTTTCAGGACTCTCACTGCATTCTCCAGATCTTTAATCTTCTCTCTTGCATCCTATTTCCACTTTTCATCAACTTTCATTTTATAATCTTAACTTTGATTCTCACTCTCCTTTGAACTAAAGTATCCTTATTTATTGTAACAAATGTTTTATGGAAAATCCTGCAAGAAAAATGACCATGGGATTCCTTCTCATCAAATCCAGTGATCTTTAACAATCTTCTTAAACTTCGTTTTTATTGCAAAATATTTTAGACATTCAGAAAGGCAGAGGACATTACAATAAATTGCTATGTACTTTCTACCTAGATTAAGAAATGAAACAGAGTTTAAATCCCAGTACTCCCATCTTTGCTTGTGAAATAACCAACTCTTCTGACTTTAAACATTGTCATTCCTATATGTGTCTTCATATTTGTATTGTATGTGTATATTCCCCCAAAATATATAATATTATTTTTTGAATTTATTTTTTATTGAAAGATAATTGTATTTATAATATTGTGTTCATTTCTGCCATATATCAACATGTATCAGCCATAGGTATACATATGTCCCCTCCCTCTTGAACTTCCTTCTCACCTCCCCCCCCATCCCACCCTTCTAGGTTGTCACGGAGACCTGGTTTGAGTTCTCTGAGTCATACAGCAAATTCCCACTGGCCGTGTGTTTTGCATATGGTGGTGTATATGTTTCCATGCTACTCTCTCCATCCATTCCACCCTCTCCCCACCCCCTCACTTATTTCCATATGTCTATTCTCTATGTCTGCATCTCCATTGCTGCCCTGAACATAGGTGCATCAGTACCTCTTTCTAGATTCCTTATATATGTGTTAATATACAATTTTTTTTTCTCTTTCTGACTTTCTTCAGTTTGTATAATAGGCTCTAGTTTCATCTACCTCATTAGCACTTACTCACGTTCCCTTTTATGGCTGAGTAATATTCCACTGTATATATGTACTACAGCTTCTTTATCCATTCATCTGTCGATGGACATCTAGGTTGCTTCCACGTCCTAGCTATATTAAATAGTGCATCAGTGAACATTGGGGTATGTGTGTCTTTCTCAGTTATGGTTTTCTCAGAATATATGCCCAGTGGTGGGATTGTTGGGTCATATGGTAGTTTTATTCCTAGTTTTTTAAGGAATCTCCATACTGTCTTGCACAGTAGTCATATCAATTTGTATTCCCACCAACAGTGCAAGAGGTTCCCTTTTCTCCACACCCTCTCCAGAATTTATTGCTTGTAAATTTTGTGATGATAGCCATTCTGACCAGTGTGAGGTGATATATCACTGTAGTTTTGATTTGCATTTCTGTAGTAATGAGTGATATTGAGCATCTTTTCATGTGTTTACTAGCCATCTGTATGCCTTCTTTGGAGAAATGTCTATTCAGGTGTTTTGCCCACTTTTTTATTGGGTTGTTTTGTTTTTCTGGTATTGAATTGCATGAGCTGCTTGTATATTTTGGAAATTAATCCTTTGTCAGTTGTTTCATTTGCTATTATTTTCTCCCATTCTGAGGGTTTTCTTTTCACCTTGTTTATAATTTCCTTTGCTATGCAAAATTTTTCAGTTTAATTATATCCCACTTGTTTATTTTTATTTTTATTTCCGTTACTCTAGGAGGTGGATCATAGAGGATCTTGCTGTGACTTATAGCACATAAATTACTACTTATAATACTGTTTTGCATATTCTTACTCTTTAAAAAAATGGTATATGTACTTCTTCCACTTGCTTTTCTCATTCAACACTGTTGATATTTACCCATATTATTCATTCATATTTATCCATATCATTCATTTCCATTGAGTTAATAAAGCACAATTTATCCATTTTCCTGTATGATAGAAATTTGGGGGTTACAGAGATAAGGCAATAAAACTTTGTATATGTAACTTCTTGTGTAAGTGTGTAAGTATTTCTCTGAGATATTTGATAGAAGCAGACTTGTTGGGTCATGGAGCAGATATACCTTTATGTTTCAGGAAATTGTTCTTCAAAGTAGTTACACCAGTTGGTGCTCCTATCTGAGAGTTTCGAGAGGTTCTAGAACTCAGCATCTTTGTCAACACTTGGCATTGTCAAACTTTCACATTTTTATAAATTCAGTGGTTGAATGTGGTGTCTTGTTTTTTCATTTTCATGATTACTAATAAGAGAGAGCATGTTTTTAATGTTTGTTGGCCATCCTTCCAGGATTTCTTTTCCGCATTACAGTCAAACACTTTACAGTCTGAGCCACCAGGGAAGCCCTTCTATAAATTACCAGTTTATATCCTTTGCAAATCTTTCTATTATTTTTTCCTTATTGATTTATAGAAAAAATATATATTATTTTATATCTTTAAAATTTTGTTTTCCATATTTAGATTTGAATCTGCATATATTTTATATATAGTGTGAGGTGAGGCTCTAGTTTAACTTTTTACATGTGGATAATAAGCCCCAGAACCATTTATTGAATAGTTTATGCTACTTGGTCACCTGCCAAGTTTCTTTATATGCCTGAGTCTATTTCTGGGCTCTATCTATTCTGTTCCATTTTTCTATTTTCTATCCTTACTCTGTCAGACTGTCTTAATTACTGTATTTCATAGTGAGATTCAATATCTTGTTCTTCAAAATTGTCCTGGCTATTGTTAGCCCCTTGCTTTTCCATATGAATTACATAATGAGTGCATCAATTACACGCACACAAATTCTCTGGTGGTATTTTGATTGGAAGATATTGAATCTATAGATCAATTTAGAGGGGAATTAATGTTATGATATTGAGTCCTGTTGTCCAGGAACGTGGTATATTGTTCCACTTATTGATATTTTCTAATTTTTTAAAATAAATTTTCAGGATTTTCCCCCATAAAAGTCTTGTATACATTACACATCTTTTGTCAGATTCATCCTGAAGGACATACATTTTATTGCTATTCTGTTTTTTTATTTTTTAGCCACACTGCATATCTTGTGGGATTTTAGCTCCTTGATGAAGCATTGAACCCTCACCCTCAGCTGTGAAAGCTTGGAGTCCTAATCACTGGACTGCCAGGGAATTCCCTCAGACCTGTTTTATGAACTAGCTGGAGTGGGAAGGGGGAAATCTTTTTATCTTTCTGAGAATGTTTCCCAAAAATAGTTATCAGTTAAAAAGACACTGTTAAGACATAGCCCTGAAATATCATTTTTTAGTATTAATAGAAAGAAGAAGATTAAAATGTTCAAATTTTTACTCTGTATATAAAATCACACTTTTACCTTGTTCATTGTGTCTTAATTTCCCATTACTTTTACAGGCTACATAACCATATTTAAATACACTCAGAATTTCATGGAACTACCATGGTGCTCCAGTGGTTAAGACTGCATGCTCCCAATGCAGGGGGCACAGGTTGGATCTCTGGTCAGGGAACTAAGAACCCAGATGCCTCATGCAAAAAAATAAATACACTCAAAATTTCATGTACCTCACATGTATTGTTATCTAAATCTGTATTCCATACCCAGTATAATAATTGATTTTTCAAAGCAAAATGAATATGAGTTATTTGCATTTTTTCCATTTCTTTCAG
Seq C2 exon
ACTTGAAGAGTAAAACAGAAACCAGTGCATCAAATGCAAAATACAACATTTTACAAGAACAGTTATATCATGGCATGATGATGGAAAGGTTCATGAGGGATGATGTCATTTATTCCACATTGAAGAAAGTCTCAGAATATGATGATGAGTTAGAAAAGCACCAGGATCGCCATGGAAGAAATGTGAGACAAACCATTATGACCCATAAGAAGAGAAGCCAAGAAACTTACAAATTTGGCAAAAATATTGTGAGTTCAAATGTTGTTATAGAACAGAGGCTCCGTAAATGTGACACACCTAGAAAGAGAAACAAATGCAAATCAGATGTGATTAATCATCCAACAAGTTACATAAGAGTAAAAACCTATGAATGTAATATATGTGAAAAGGCCTTCAAACAACCCATTCACCTTACTGAACACATGAGAATTCATACTGGTGAGAAACCTTTCAGATGTAAGGAATGTGGTAGGGCCTTCAGTCAAAGTGCATCCCTTACCACACACCAGAGAATCCATACTGGTGAGAAGCCCTTTGAATGTGAAGAATGTGGCAAAGCCTTCAGACATCGCTCATCTCTTAATCAGCATCATAGAACCCACACTGGGGAGAAACCCTACATATGTGATAAATGTCAGAAAGCTTTCAGCCAGAACATTAGCTTGATCCAGCATTTGAGAACTCATTCTGGAGAGAAACCCTTTACGTGCAATGAATGTGGGAAAACCTTTAGACAGATTAGACACCTTAGTGAACATATAAGAATTCATACTGGGGAAAAGCCCTATGCATGTACTGCATGTTGTAAAACCTTTAGTCATAGAGCTTATCTAACACATCACCAGAGAATCCATACTGGGGAGAGACCCTACAAATGTAAAGAATGTGGGAAAGCCTTTAGGCAGAGGATACACCTTAGCAACCATAAAACTGTTCATACAGGAGTGAAAGCATATGAATGCAACCGCTGTGGAAAAGCATACAGGCATGATTCATCCTTTAAAAAACATCAGAGGCATCACACAGGAGAAAAACCTTATGAATGTAATGAATGTGGAAAAGCCTTCAGCTATAATTCATCACTAACTCGACACCATGAAATACACAGGAGAAATGTCTTCCAAAATAATATCTGAAAACAGATTATGCACCATGAGAACAAAAGCTAAATCTAAATCAGTAACCCTGTGCTTTGAATTTTAGGACTCTAAATTTGAGGAATTGACATAATGATGCCAACTTCTAGTTTTGCTCATTGTGTAAATAAACACTACGTTGATAACTACTATTTACTAATACCTCCACACAGAGTTACTTTATCGAGAATAAAAGATGGCCCTTCAATTAAATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039287:ENSBTAT00000052349:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=NA C2=0.201
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]