Special

MmuINT0179721 @ mm9

Intron Retention

Gene
ENSMUSG00000064141 | Zfp69
Description
zinc finger protein 69 [Source:MGI Symbol;Acc:MGI:107794]
Coordinates
chr4:120602742-120607036:-
Coord C1 exon
chr4:120606938-120607036
Coord A exon
chr4:120604112-120606937
Coord C2 exon
chr4:120602742-120604111
Length
2826 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
CCCCCCCCACCCCCATTCAGATG
3' ss Score
8.99
Exon sequences
Seq C1 exon
CAGGATATCAACTTTCCAAGCCTACTGTGATTTCCCAGTTGGAAAAAGGAGAGGGACCATGCATGGCAGAGAGTCAAGGCCCAGAGGATCCCATTTTAG
Seq A exon
GTAAGACCAGGGTAGATGAGCCCTTTGGATAGGTAGGCCAGAGTGCTCGGTCTTCCCAGGCTGTCTGGAAGGCTTAGGGCACAGACAGGACCTGCACTACATCTCATTTCACCCCTTCCTCACGCCCTTTTGAGAGTCTCTGTATGTAGGAGGGAGAGAAGACTTGCCCTCATTGGAGTTAAACCTGATCCTCTCACAGAACAGGAAGTAGCTGACATGAAGTGCCTCATAGATACTTGCTGTCTTCAGTGCCATGTTACATTCCACAAATCTTCTTCCCTTTTGCTTCCTATATCTCCTTTTCTCGCTGTTATTGTATAATCCTAACTTCAGTTTTGTTTCTCCTTTTAACTCATGTATACACTTTTCTTCATAACGACTTCATAAAAAGTCCTGCAAGAGGGCCGGCGAGATGGCACAGCAGGTAAAGGTCCTTGCTCCCACAACTAAAGACCCGAGTGCTGTCCCTGGGATCCACAGTGTGAAAGGAGAGAGCTGTTCCTTAAAGTTGTCTTCTGGCCTTTATTCCCATGTGTACTGAGACATGTATGTGCATGTACATACACACACACACACACACACACACACACACACACACACAATTTAAAAACTTAAACTTTTCTCTCACAAATAATCAGGAAAGATAAAGAAACCATATTCACCCAGTAAATTTACATTAATGTTAAAGTGTTGGCAAAAATGCTGACTCAAATCTGCTGACTGGAAACAAAACATTGAAACGTACTGAAAGGCAATGTGGTGTGCCCTCACCAAATGAAGGTGCATCTACCATGACCCAGCAATGTGTTTTAGCCAACTCCCTTAGAGGAATACTTGCCTATGAAGCCAGACACATATGTGCATGGATATGTGTATCATCGGATCCGTGTAACCTCCAGTGCGTGTTTTAAGAGGTAGTGGCAGAAGGGTCTGGAATTCAGGGCCAGCCTGACTTAACTGATAGTGTGCCTCATATAAAAAAAGGATCAGGATTTTCTCCATAAAGGTCTTACACACATTACATATCCTGTGTTAGATTTATTCTGAGATCTTGCACTTGATAGTATAGGTGATATATTTTTAGAGTTATATTTTGTATATTACTGCTAAATAGTAATACCTAACTTTGAATGTTTCTATTTTGACATTTTAAACTTTTATTCATTGTTTTGGGCATTTTGAAACAAGGGATTATTATTCTGTAACCCATGATGGTCTCAAACTCAAGATGATCCTCCTGCCTCAGTTTTCAGAATATCAGACCAGAATCTGCACTCTCTGCTTGTTTTTTTCAGAATTACTATTCATAGTGCTCTTAGGTTACCCTGTTATAAACAGTACTCACCTGTACGTCCTCCTGGGTTTTATTGTGCGCAACTGATATTTTTGAGAGCGATACAGGCTGAGGGTACAGTTCTCGGGCAGAAAACTGCCTGCTTATGCCGGGATCACAAAGCAGGCAACAACGAGAAACCATGGAAGCTGCTGTGGGTGCTGTTGTCTCTTGATGGAATCTTAAAAGTAACCTTGTAGAGGGTTTTTAAAAAGAAGTCTTAGCCAGCAACTGTGGTTTATGACTGTAGTCGTAGAGTGAGGGGCAGGAGATGAGGACTTCAAGGTCATACTCACCTTTATCGGAGGATGGAGGCCAGACTGGGCTACTTGAGACCCTGTCTTTGCGGGGGGCGGGGGGGGAGACCTTAAATAAATAACAAGTATTTATTTAATTCCGTGAAATAGAAAAATTGCAGTTTCAAAGTTCAATCTTGCTTTATCATCTCCTGAGCTCTAGATTGAGACATGCAGGTGGTCTCTTCCCATCATCCCCTTCTCCTCTCCAAGCCCAGAGCCAAGGCCTGATAAACCTAGACTTTATTACTGTCTCTTTTGAGAGCTTGAAATTTGAAAATGCATAAGGTCCTTCTATACTGATTTAAAAATTTTACAGGAAATTATTTCTTTCATGGATATAAACCTATCATCTGAAATATTAGTAATGATATAATGAATTACTAAGAAAGAAAACTAGCCAAAATTTTTTTAAAAATTTTTTGTTTGTTTTTATTTCTCTGTAGCCCTGGCTGTCCTGGAATTCACTCTATAGACCAGGCTGGCCTCAAACTCACAGAGATCTGCCTGCCTCTCCCTCCTGAGTGCTGGGATTAAAAGTGTGCACCCACCACTGGGGTTGGGGGTGCCATCTTTTTAATATTTCTGAGATAGTTGTTCAGAATAGTTATCAGTTTAAAGCCATATCCTTGAAGGCATAGGCCTTCAATGTCATGTTTTAGTTTTTTTCTTTTGTTTTGTTTTTCCGAGACAAGGTTTCTCTGTATAGCCCTGGCTGACCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCTCCTGCCTTTGCCTCCTGAGTGCTGGGACTAAAGGCGTGCGCCACCACACCCGGCTATGTTTTAGTGTTATTAGAACACAGCTAAGCCACACGTGTGACACACAGCCAGCATTTGAAAGGTAGAGGCCGGGGGGGAGCAGGAACTTGTGAGGCCCCATCTCAAAACAAAACAAAAACAAAAAGAAGAAAGATAGAGAGTTGAATGCTGCAAATTGTATAGCATATTAAGTCGGGTACAAACAACCTAGTCACTGTTTCTTTGCATTTGATTTATTTTTGGAATAGGTCCATAACTCTATCTGGATACAGTAAAACCTCATGCCACTTTCTGTACTGTATCTGAATATCTTCTGCAACATTTTCAGGGTTTGATTTTCTTCAGAGCATAATGAATGAGCTATTCACATTCCCCCCCCCCCACCCCCATTCAG
Seq C2 exon
ATGTGAAGAATAAACTAGAAACCAAGGAGTCAACTGCAGAGGATGACATTTCTGTCAAGCTCGATCATGGCATCACGAGGGGAAGGCTGATAGAGGATGATATAGTTTGTTCTCCATTGAAAAAAGCCTCCAGCTACAGTGATACATTAGAGAGTCACCGGGCAACCTGTGGGAAAGGCACGAGACGAGCCATTTGGACCCACAAAAAGAAACGCCAAGAAGGGAACAAATTGGAAAACCCAGAGAGTTCCAATGTTATTTTAGAACAGAAGCACCGTAAACACAAACCAGCCAGAAAGAGGAACAAGTATAAATTAGATTCAATTGATCACCCAGTGAGCTGTATGAGAGCCAGAAGGTACCCATGTAATGTGTGTGAGAAAATGTTTAAGCAACCCATTCACCTTGTCGAGCACATGAGAACTCACACTGGCGAGAAACCGTTCCGGTGCAAGGAGTGTGGGAGGGCCTTTAGTCAGAGCGCATCTCTCAATACGCACCAGAGGATCCACACTGGGGAGAAGCCCTTCGCATGTGAGGAGTGCGGCAAAGCCTTCCGGCATCGCTCGTCGCTTAACCAGCATCACCGGACTCACACTGGAGAGAAACCGTTCACGTGTGACAAATGTCAGAAAGCCTTTAGCCAGAACATCAGCTTGGTCCAGCATCTGAGGACTCATTCGGGAGAGAAACCCTTTAGCTGCAGTGAATGTGGGAAACCCTTTCGACAGATTAGACACCTTAGCGAACATGTAAGAATCCACACTGGGGAGAAGCCCTACAAATGCACCTCCTGCTGTAAAACATTCAGTCATAGAGCATATCTCACACATCACCAGCGAATCCACACCGGGGAGAGACCCTACAAATGTAAGGAGTGCGGGAAAGCCTTCAGGCAGAGGATACACCTTAGCAACCACAGGACTGTTCACACAGGGGTGAAAGCCTACGAGTGTAACCGCTGTGGGAAAGCCTACAGGCACGACTCCTCCTTTAAGAAACACCAGCGACATCACACGGGAGAAAAGCCTTACGAATGTACTGAGTGTGGAAAGTCCTTCAGCTATAACTCATCCCTGAGCCGACACCAGAAAATCCACAGGAGGAACACTTTCCGAGATGATCCGGGACATGAGAACAAAAGGCAGCTCTAAATTGGTGATTCTGAGCTTTAAAGTTTCAGGACTCGAGTAACCTTGAGAAATTAACAACAACGGTGGCAACTTTTGATTTTGCCAAAAGTGTAAATAAATACCCTGTTGATTACTACTGTCTGACAATTACACAAAATGATAAATTAAGCATTATGAGAATTTCACAAATATTTTTTTACTCATTTCATGATAGATGAATAAATTATTTCTTATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064141-Zfp69:NM_001005788:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.711 A=NA C2=0.348
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000101887





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000061789, ENSMUSP00000081327, ENSMUSP00000101888, ENSMUSP00000133312
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr1:40489625-40494920 
ALTERNATIVE
HsaINT0187982
(ZFP69)
Human
(hg19)
chr1:40955297-40960592 
ALTERNATIVE
HsaINT0187982
(ZNF642)
Rat
(rn6)
chr5:139858964-139862929 
ALTERNATIVE
RnoINT0005501
(AABR07049821.2)
Cow
(bosTau6)
chr3:106261210-106265085 
LOW PSI
BtaINT0164397
(ZFP69)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"