HsaINT0187982 @ hg38
Intron Retention
Gene
ENSG00000187815 | ZFP69
Description
ZFP69 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:24708]
Coordinates
chr1:40489529-40496343:+
Coord C1 exon
chr1:40489529-40489624
Coord A exon
chr1:40489625-40494920
Coord C2 exon
chr1:40494921-40496343
Length
5296 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTTTTTTTCATTTCTTTCAGACT
3' ss Score
10.99
Exon sequences
Seq C1 exon
GATATCAACTTTCCAAACCTAGTGTGATATCCCAGTTAGAGAAAGGAGAAGAGCCATGGATGGCAGAGAAAGAAGGCCCAGGAGATCCCAGTTCAG
Seq A exon
GTGAGACCAAGTGTGTTAGTCTGTTTTTGTGTTGCTATAAAGGAATACCTGAAACTTCATAATTTATAAAGAAAAGAAGTTTAATTGGCTAATGATTCTGCAGGCTGTACAGGAAGCATGGCACTGGCATCTGCTCCTGGTGAGGGCCTCAGGAAACTTACAATCATGGTGAAAGGCATATCACATGGTGGGAGCTGGAGCATGAGAGTGAAGGAGGAGGTGCCAGGCTCTTTTTCTTTTTCTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCACTGTCGCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCCGCCTCTGGAGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGTTATGCGCCACCACGCTCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGATGGTCTTGATCTCGACCTTGTGATCTGCCCACCTCGGCCTTCCAAGGTGCTGGGATTTCAGGTGTGAGCCACTGCGCCAGGCTGGTGCCAGGCTTTTTAAACAACCAGATCTCATGTGAACTCAGAGTGAGAACTCATTACCATGGGGAGGACACTCATTCATGAGTGATCCACCCCCATGACCCAACACTTCCCACCAGGCCCCACCTGCAACACTGGGGATCACATTTCAACATGAGATTTGGAGGGGATAAATATTCAAACCAAATCACCAAGGCAGATGGAATTTTAATATGTAGGTCAGAGTGCTCAAAGCCTCGGCTGTGGGGAGGGCTCAGACCACTGGACAGAGCCTCCACTAAACTAATATCACCCGTCCCTTCCTTACCCCTTTCCTTCACTGAGCCCTTGCAAAAGTCCCCTGGAGTTGGAGGAAAGAGCAGTCTTGTCCTCATTAAGGTTGAGCTGGATTTTCCCTTTCTCCAGTATCCTAAGGGCTGCCAATCTAAAGCTTTCTCTAAGCAGTCAAATGTATGTGGTATTTTCACAGAAAACCAATCTCTTTCCAAGACTCCCATTGCATTCTACAAATCTTTAATTTTCCTGCACTCCATTTTTACTTCTTGCCAATGTTCATTTTACAATTCCAGCTTCGATTCTCATTCTCTTTTTAACTTATGTATCTTTTTTGTAACAGCTACTTATGAAAACTCCTGTAAGAGAAATTACCAAAGGATTCCTTCTCAACCAAATGTCGGGGTCCCTAACAATCTCCTCAAACTTTGCTTTTTATTCTGAAATATTTTAGACACTCAGAAAGGCATAGAAAACATTATAACACATTTCTGTGTAGCTTCCACCTAGACTAAGAAATGAAACACAGTTGAAGCTCCACTGTCCCCCTTACACCTTTTGAAATAAGCACTCTGCATTGAAATATTATTCCCATGTCTTCGTGCTTTTATTACATGTATAATGTAGTAAAAGCAGTCTATATATCAGTGTATACATACTAAACAATATATAGCATTGTTTTGCATGTTCTCTTTCTTTAAATAAATGGTATATATACTTCTTCCTTTTGCTTTTCTCATTCAACACTGGTGATATTCCTCAGTATGTTATTCTAGTTCATTCAATCCATTGAGTTAATAAACCACAATGTTCTTATTCATTTTCCTGTTGATAGACATTTACATTGTTTCCAAATTTGGGAGTTACAAAGATGCTACAGCAAACCTTTGTGTACATAACTTCTTGTATACATAATGCAAGTGTTTCTCTAAGATAGCTGGTAGAAGCAAAATTGTTGGGTTGTAGAATATATGCACTTTCATTTTGCTAGGTATTACCAATTTGCTCTTCAAAGCAGTTACACCAGGTTATTCTCCCATTAACAGGGTTTGAGAGTTTCCATAACTCAGCATCTTTGTCAACATTTGTTATTGTCAAACTTTAAGATTTTTGTAAATTCACTGGGTTATGGTATCTTGTTTCTTTCATTTTCCTGATTACCAGTGAAAGGAAGTATATTTCTCATGTTCATTGACCATCCATCCATCTCTTCTTCTGTCCTTACTCTAATGCCAGGCTCTTCTGTTAATTACCTGTTTATATCCCTTGCCAATGTTTCTATAATCTTTTTTTCTTATTGATTGGTAGAAAAAAATGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTATATATATATATATTCATTCTAGTATAATTATACATATATTCATTCTAGATAATAATCCTTGATAGCTTTATGTTTTGCAAATGTTTACTCTAGGTCAGTGGCCCATCTTTGACTTTTCAAAATTAGTGTCTTTTGTTAGACGTGAGTTTCTAAATTTAATGTTACTGAATTTATCAGGATTTTCTTTATTGTTTGTGCTTTTTAAGAAACCCTTTTATGCCTTATTATTCTTTTTTGTAAACTTTTTAAATTGTTTTTAGAGACTGGGTCTTGCTATGTTGCCCAAGCTGGCCTCGAATTCCTGGGCTCAAGTGATTCTTCTGCCTCAGCTACCTCACCTACTAAAGAGGCTGAGGCAGGACTACAGGTGCATGCTGCTGTGCCCTGCTATCCTCCATTTTATCATATATGTGGATCATACATATATGTTTTTACATATTCCTGTATTTTCAAAGTTTTGCTTTCCACATTTAGGTTTAATTCATCTGGAATTTATTTTATATAAATAAATTTGTATGTATGAGGTGGAAATCTGATTAACTTTTTCCACATGGATAATCAGTCCAGGAATAGTTAATGCTGCTCTGTCACCTGTCAAGTTTCTTTATATGTTTGGGTCTGTTTCTGTTTTGTATATTCTTTTTCTGTCGTGTTTCTCTCTTTATGTTGTTTTATTCTTTTGTTTTTCTGTCCTTACTCTAATGCCAGGCTGTCTTAAAAACTGTATCTCATAATGAGACTTAATATGTGGTAGAGGTAGTTCACCCACCTTGTTCTTTAAAGTTGTTCTGGTTATTCTTGGATCCTTGTTGTTCTATTTGAATTATATAATCAGAGCATCAAATCACACCCACAAATACTCTGCTGGCATTTTGATTGGAATAGAATTGAATTTCTAGATCAATTTTGGGGGAGTTAACATTGTTATGCTATTGAATCCTTCCAGGAATATGATATAGCACTCCATTTATTGATATTTCCTAATTTTTTTCAGTAACATTTCAGGATTTTCTCCTGTACATATTGTACATTTTTTGTTAGATTGATTCTGAAAATCTTATATTTTGTTGCTACTGTAGATGGTATTTTTTTTCCTTTTCTTTTCCCTGAGCCTCAGTCGTGAACAGGTATATTTTTAAAGAAAGATTATGTTGCTGGCCAGGTGCGGTGGCTCATGCCTATAATCCCAGCATTTTGGGATGCTGAGGCGGGCAGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGGTGAAACTCCATCTGTACTAAAAATACAAAATTAGCCAGGTGTGGCGGTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCAAGATCACGCCGTTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCTGTCTCAAAAAAAAAAAAAAAAAATTATGTTGCTAGTAAGTAATAACAAAATTGATTTTGAATATTGACCTTTTATACAGCCACCTTGTTTTACTCTTATTAATTCCAATCACTCTTTGTATATTTTCCTGGGTTTTCTCTTCCTCAACTTACAATAATGAAAATAATAATAAAAGCTACCATGAATGTTCTTTCCCAGCCTCTGGATGAAATCTCAAAGAGTTCCATTGATGATCCCGTTCCTTTAAATAACAAGAACAGTCTTGACTTTAGTAAAATGCCTATTTAGTTCAGTGCAATAATAAAAACTCCCAACTTCATTCAAAACTAAACCCTCTCTTCTTCCCCACTAGCTTGACACTCCCTCATGCTCGGATACTGAATTAGGGAGGGATGCATAAATGGCTTCTTTTCTTTTCCCCCATCATCTTCTTTTCCTCCTCCGCTATTCAAGACCAGAATCAGGGACCTGCAGAGCATAGATATTATTAGACATTATTATTGCCTGTTGTCATTTAGAATTTGACATTTTGAATTGCTAATGATCCATCTGTGTTGGCTAAAAAAAATCTTATAAGAAATTAAACCTTTCAGGAATACATAAAGACCTGTCAGTTGAAATATTAGTAATGGTGCAACAAATTTATCAAGTAAAAATCTTAAAGGTTAAAGGGTATTTTCCTAGAACCTAGCAGCAGTAACAGCATAGCAATCTGGGTTTCTTACAAGTCTCCTTTGTATAAGTAATACTTCCATGAACATATTAATAACTATAGAAAGAGAAATATATATATATACACACACACAAGTTTCAATAAAAGACAGCATAATGTTCTTGTGTGTATTCTTAGTTCAAACTGTATTTTCTGAACGAATGTCTCCTGCTGCTGCCAGAGTGGGGAGGGAAACATCTTCCTTTTATCTTTCTGAGATTGTTTTCCAAAAGTAGTTGTCAATTAAAAATACTTATATTCTTAAGTCATAGCTCTGAAATTTTATTACTTAGTATTATTAGAGCAGGACTAAAAGATTCAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACTACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCAAATATTTATATGATATTTATAAATATTTGATATATTTATAAATATTTTATATATAAAATATACATTATATATAAAATATATATTTATTTATATTTATATATTTATAAATATTTGGTATATAAAATATACATTATATATATATAAATATATATCAAATATATATATATATATAAAATGACACTTTTAACCTGTTCACTGTTTCTTAATTTCCTTTCCCATTACCTCTCCAAGCAGCATAATCATATTTAAATATAGTCAAAATCTCATGCACTTATCCATATTGTTGTCTAAATCTCTGTTCCATAACCACTACAGTAATTGGTTTTTAAAGCTTTTTTTCATTTCTTTCAG
Seq C2 exon
ACTTGAAGAGTAAAATAGAAACCATTGAGTCAACTGCAAAGAGTACCATTTCACAGGAGCGCTTATATCATGGCATTATGATGGAAAGTTTCATGAGGGATGATATAATTTATTCCACGTTGAGAAAAGTCTCCACATATGATGATGTCTTAGAAAGGCACCAGGAAACTTGTATGAGAGATGTGAGACAAGCCATCTTGACCCATAAGAAGAGAGTCCAAGAAACTAACAAATTTGGGGAAAATATCATTGTGCATTCAAATGTTATTATTGAACAGAGGCACCATAAATATGATACACCTACAAAGCGGAACACATACAAATTAGATTTGATTAATCATCCAACAAGTTACATAAGAACAAAAACCTATGAATGTAATATATGTGAAAAAATCTTCAAACAACCTATTCACCTTACTGAACATATGAGAATTCATACTGGTGAGAAACCTTTCAGATGTAAGGAATGTGGAAGGGCCTTTAGTCAAAGTGCATCCCTCAGTACACACCAGAGAATCCATACTGGTGAGAAACCCTTTGAATGTGAGGAATGTGGGAAAGCCTTCAGACATCGCTCATCACTTAATCAGCATCATAGAACTCACACTGGGGAGAAACCCTATGTATGTGATAAATGTCAGAAAGCTTTCAGCCAGAACATTAGCTTGGTTCAACATTTGAGGACTCATTCTGGAGAGAAACCTTTTACTTGCAATGAATGTGGGAAAACCTTTAGACAGATTAGACACCTTAGTGAACATATAAGAATTCATACCGGGGAGAAGCCCTATGCATGCACTGCATGTTGTAAAACCTTTAGTCATAGAGCGTATCTAACACATCACCAGAGAATCCATACTGGGGAGAGACCCTACAAATGTAAAGAATGTGGAAAAGCCTTTAGGCAGAGGATACACCTTAGCAACCATAAAACTGTTCATACAGGAGTGAAAGCATATGAATGCAACCGCTGTGGAAAAGCCTATAGGCATGATTCATCCTTTAAAAAACATCAGAGACATCACACTGGAGAAAAACCTTACGAATGTAACGAATGTGGAAAAGCCTTCAGCTATAACTCTTCACTTAGTCGACATCATGAAATACACAGGAGGAACGCCTTCCGAAATAAGGTGTAAAAACAGATATTTGACTTGAGAACAAAAGCCAAGTGTAAATTGGTGATTTAGAGTGCTTTAAAATTTCAGGACTCAGATATGAGGAATTGATGTAATGATGCCAACTTTTAATTTTTCCCATTGTAAATAAACATTACATTGACAGGTATTGACTACTAACACCTCTAAAAAGTACTTAAGATTAAAATCTGGTCCTTAAAATTAAATGAATTCAGCATTATGAAAAATTCATAACAGTTTTTTTCTGATTTCATGGTGGATTAATAAATTATTCTTCATGGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187815:ENST00000372706:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.606 A=NA C2=0.129
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains