HsaEX0074139 @ hg19
Exon Skipping
Gene
ENSG00000197343 | ZNF655
Description
zinc finger protein 655 [Source:HGNC Symbol;Acc:30899]
Coordinates
chr7:99159991-99162328:+
Coord C1 exon
chr7:99159991-99160117
Coord A exon
chr7:99160817-99160889
Coord C2 exon
chr7:99161486-99162328
Length
73 bp
Sequences
Splice sites
3' ss Seq
TGTCATTTTGAAAGGTACAGTGG
3' ss Score
-4.28
5' ss Seq
GGTGTGAGC
5' ss Score
2.37
Exon sequences
Seq C1 exon
GAGTTTGTGACATTCGAGGATGTGGCTGTGCACCTTACTCGAGAGGAATGGGGATACCTGGACCCTGTTCAGAGGGACCTCTACAGAGAAGTGATGTTAGAGAATTATGGGAACGTGGTCTCACTGG
Seq A exon
TGGGAAGCTGGGATTAGCCAAGCTGTAGTGCTGCTGGGAAGCATCAGTGGGGTTTGTCGGCAGCTCCCTTGGT
Seq C2 exon
GCATACTTCTCCGCCTTCCCACCACCCGGATTCATAGTGTGAATTCCTGCCCGGCCCTGAGTCATACCCAGGCAAGTGCTTTCTCTGGAGAAACACTTGCCGTCCTTACAGCAGGAATCTCCAAGAGATGGCCCAAGTATCGGCTTCCCATCGATATTGCTCGTCCCTGCTCGGAAACTCCTTTTCCACGATTGTGAGATATTAAAATTGACTGATGGAATAGAAGCTCCCCAGGATGCCACCACTGTGTAAAATCGCAGCTCCTCAAATTACCTCTGTTTAATTTCAAATGTTAGGGTCCAAGGAAGCCCTCTGTTGCAACCAGATATGTTTTGAACCCAGTTCATTCAGAAACCATGGTTGGTGGTCATCATCTACTTGTATTGTGAAAAACCAGAAATTCCAAATTCAGCTCTTCAGTTATGGTCTTTTCATATTATTTTAGAATGTGAAACTTATGCTGTGTGCCCCTCCTTTTATGTGGCGAACACAACCTGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197343-'9-16,'9-14,11-16
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.341 C2=0.026
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NO
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGCACCTTACTCGAGAG
R:
GCACTTGCCTGGGTATGACTC
Band lengths:
182-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)