HsaEX6009263 @ hg19
Exon Skipping
Gene
ENSG00000197343 | ZNF655
Description
zinc finger protein 655 [Source:HGNC Symbol;Acc:30899]
Coordinates
chr7:99159991-99169410:+
Coord C1 exon
chr7:99159991-99160117
Coord A exon
chr7:99168883-99169002
Coord C2 exon
chr7:99169311-99169410
Length
120 bp
Sequences
Splice sites
3' ss Seq
CACTGATTCTCTTGCTACAGGTT
3' ss Score
7.85
5' ss Seq
TAGGTAACA
5' ss Score
6.25
Exon sequences
Seq C1 exon
GAGTTTGTGACATTCGAGGATGTGGCTGTGCACCTTACTCGAGAGGAATGGGGATACCTGGACCCTGTTCAGAGGGACCTCTACAGAGAAGTGATGTTAGAGAATTATGGGAACGTGGTCTCACTGG
Seq A exon
GTTAGCTAACCATGCAGCAGGTGCTTGAGTTTCACCTTTCTCCAGTCCAGCAGAATTACATTTTGATGACCTCCATTTTGATACTTGTAGACCAGATCTAATCCGAAGATTAATCTTTAG
Seq C2 exon
GATTTCCAATTTCCAAGCCTGATGGGATCTCCCAGCTGGAACAGGATCTACAGGTCTTTGATCTGGAAACTAAGACTAGAGAAGTCTTAAGAGATGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197343-'9-20,'9-18,18-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.200 C2=0.300
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGTGACATTCGAGGATGTGG
R:
CAGTCATCTCTTAAGACTTCTCTAGT
Band lengths:
226-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)