HsaEX0074179 @ hg38
Exon Skipping
Gene
ENSG00000197124 | ZNF682
Description
zinc finger protein 682 [Source:HGNC Symbol;Acc:HGNC:28857]
Coordinates
chr19:20024250-20039506:-
Coord C1 exon
chr19:20039343-20039506
Coord A exon
chr19:20030993-20031113
Coord C2 exon
chr19:20024250-20024376
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGTCTATTCTGTTCCCACAGAAT
3' ss Score
10.78
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
Exon sequences
Seq C1 exon
GGCCTTTGTCTCGCTCCAGCCAGAGCTCAGGGTCCATCTTCATTGCTTAGTATCCTCTGCTCTAGTAGTTCCCGGTGACTGTCGCAGCCTCTGTTGCCCTCTGACTTGCAGATGCTGTGAGATCCAGAGCTAAGACTCCACGACATCCCGGAAGCCGAAAAATG
Seq A exon
AATCAGTCTCAGTGTTTCCTGTTTGGATTGCCATGAGGACATCAACCCAGAGTGACTGTAGACCCTCTTCCCAGCACCTGAGAGTCTTTGAGACATTTGAGGTTGTTGTGTGCAGACTGGG
Seq C2 exon
GAACTGTTGACATTCAGGGATGTGACCATAGAATTCTCTCTGGAGGAGTGGGAGTTTCTGAACCCTGCTCAGCAGAGTTTGTATAGGAAAGTGATGCTAGAGAACTACAGAAACCTGGTCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197124_MULTIEX1-2/11=C1-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PU(88.9=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTCTCGCTCCAGCCAG
R:
TCCTATACAAACTCTGCTGAGCA
Band lengths:
249-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development