HsaEX1045381 @ hg38
Exon Skipping
Gene
ENSG00000197124 | ZNF682
Description
zinc finger protein 682 [Source:HGNC Symbol;Acc:HGNC:28857]
Coordinates
chr19:20024250-20039506:-
Coord C1 exon
chr19:20039343-20039506
Coord A exon
chr19:20027075-20027137
Coord C2 exon
chr19:20024250-20024376
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTACAGATGTGATTTTCCAGATA
3' ss Score
6.06
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGCCTTTGTCTCGCTCCAGCCAGAGCTCAGGGTCCATCTTCATTGCTTAGTATCCTCTGCTCTAGTAGTTCCCGGTGACTGTCGCAGCCTCTGTTGCCCTCTGACTTGCAGATGCTGTGAGATCCAGAGCTAAGACTCCACGACATCCCGGAAGCCGAAAAATG
Seq A exon
ATAATATCACCTGAGAAGGAATCCCAAAGGGAAGAGCAAGAGGAAGAAATGGCTGGTTCTCAG
Seq C2 exon
GAACTGTTGACATTCAGGGATGTGACCATAGAATTCTCTCTGGAGGAGTGGGAGTTTCTGAACCCTGCTCAGCAGAGTTTGTATAGGAAAGTGATGCTAGAGAACTACAGAAACCTGGTCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197124_MULTIEX1-4/11=C1-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.952 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=PU(88.9=94.1)
Main Inclusion Isoform:
ENST00000397165fB30893
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTTGCCCTCTGACTTGC
R:
GCAGGGTTCAGAAACTCCCAC
Band lengths:
144-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains