HsaEX0074244 @ hg19
Exon Skipping
Gene
ENSG00000140548 | ZNF710
Description
zinc finger protein 710 [Source:HGNC Symbol;Acc:25352]
Coordinates
chr15:90617348-90625432:+
Coord C1 exon
chr15:90617348-90617522
Coord A exon
chr15:90617854-90617914
Coord C2 exon
chr15:90622892-90625432
Length
61 bp
Sequences
Splice sites
3' ss Seq
TCATTGTCATCGTTTTACAGATG
3' ss Score
10.02
5' ss Seq
GAGGTGACA
5' ss Score
3.85
Exon sequences
Seq C1 exon
GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGCCACATGCACCTGCACGCCGGCAGCAAGCCCTTCAAGTGCCCCTACTGCTCCAGCAAGTTTAATCTCAAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGCGTCATGGACATCGGCCTGGACAGCCAAG
Seq A exon
ATGCAGAAACTGAAGAACAGAGAACTTAGATAGCTCATGCAAGATGACAACACAGCAGGAG
Seq C2 exon
ACCCCATGATGGAGCTGACAGGCACTGACCCTTCAGAGCTCGACGGCCAGCAGGAGATGGAGGACTTCGAGGAGAACGCCTACAGCTATGCGAGCGTGGACAGCAGCGCCGAGGCCAGTGTCCTCACTGAACAGGCCATGAAAGAGATGGCCTACTACAATGTGCTATAGCGCAAGCTGGGCCACCCCTAACGGGGGCCGGGGGCGAGGGCATGGGGGTGAGACCCATGGGCTGCAGGCTGCACCTCCTGCAGCCGAGAAACAAGCTACTGCCCCACTGTTCTGAGCCCTCCCTCCCCGAGTCATTTGCACCACTAGGGACCTTTAGACCAAATGGAGACTGTACTACTGGCCCCGGCTGTGAGCCAGCACAGGCCCAGGCATCCCAGCAAGGGAAGGAGAACACGCGAGGCCCAGATCTGGGTCTCCCTGGCCTGCTTCCGTGGGGAGTGGGAGAAGTGGGGCCACTGGGGACAGGTCACAAGGGCACCGGCCCTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140548_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.889 C2=0.304
Domain overlap (PFAM):
C1:
PF054957=zf-CHY=PD(45.8=25.4),PF134651=zf-H2C2_2=PD(26.9=5.4),PF069576=COPI_C=PD(56.4=47.7),PF0009621=zf-C2H2=WD(100=18.5)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGAAGGTCAAGCATGGCG
R:
TGTAGGCGTTCTCCTCGAAGT
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)