HsaINT0188212 @ hg19
Intron Retention
Gene
ENSG00000140548 | ZNF710
Description
zinc finger protein 710 [Source:HGNC Symbol;Acc:25352]
Coordinates
chr15:90617348-90625432:+
Coord C1 exon
chr15:90617348-90617522
Coord A exon
chr15:90617523-90622891
Coord C2 exon
chr15:90622892-90625432
Length
5369 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ACTGTGCCCCTCTCTTACAGACC
3' ss Score
12.15
Exon sequences
Seq C1 exon
GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGCCACATGCACCTGCACGCCGGCAGCAAGCCCTTCAAGTGCCCCTACTGCTCCAGCAAGTTTAATCTCAAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGCGTCATGGACATCGGCCTGGACAGCCAAG
Seq A exon
GTGGGTGGGCCAAGCGCAATGGACAGAGCAGGAATGATACCAACATGACGCACTCAGGAGCCTCCTGCCCAGTTAGAGGAGTGGGGAGGCTGGCCAAGGCTGAGACTTCGTTGGGGTGGGCTCAGGTCTGGAAGGGGGGTACCCTGGAAGGCCATGATGACAATAACGATGGGATATTTATGTCTTCTTCAAAGGACTTAAATGAGATCACGTAAACAATATAATAAAAATCATAACTAACATTTATTGAGTGCTAACTGTGTGCCAGGCCTTTATTAACTCATGTGATCCTCAAAGCGAGGTTGGCTCTGTCATTGTCATCGTTTTACAGATGCAGAAACTGAAGAACAGAGAACTTAGATAGCTCATGCAAGATGACAACACAGCAGGAGGTGACAGACACTTTATTTCGTTACCGTGAGATAATATTTCAAATAAGTGTATGGGAAAGAAAGTTAGAAAGGGGAAAAAATGGCAGCCGGAAAGATAAGGGAGAGCCAGGTGAGGTCCCAACTCCAAGTACACCATGGGAGGTCCTAAGCAAGGGACATGCAGAGGGGAGATCTGAGCTTCCCAGCAACCAAGGCAAAAAAGTGTCAATCAGTCACACTCTTCACAAGTGCCTGCCAGAGACTATAACCCACATACTCATGAAAGGGCCAGACAGCCCTGACGTTAAGATCTGGGAGAAATTTTAGGAGAGGATCCTATGCCTCAGCAGTTCGTAGAAGTTTCAGAGGCTGTCAGAAAACATCCCAAGTGTTAGCGGTAGCCTTTCCCTCCAGCAGTGGTCAGTACTTAAAGCATTTCTGTTGGGTGACAGCAAAGCTGTTAGCCTCTCTGGCCTCATGGTGGGGAGGGACTGCTGTGGAGACTCCACAGGAAGGAGGGAGCCAACAGCGCTACAGGGAGGCTCCTTCTACAGTTGGGAGCTATTTCTGGTGCTCTGGCTGGGCATGATGGCTCACACCTATAATCCTGGCACTTTGGGAGGCCGAGGCAGGAGGATCCCTTAAGGCCAGGAGTTTGATACCAAACCAGGCAACATAGTGAGACCTGGTCTCTACAAAAATATTTTTAAATTAGCTGGGTGTGGTGGCGTGTGCCTATAATCTCAGCTACTTGGGAGTCTAAGGCAGGAAGATCACTTGAGCCCAGGAGTTCAAGGCTGTAGTGAACTGTGATCGGACCACGGCACTCCAGCCTGCGTGGCAAAGCAAGACCCTATCGCCAAATTATAATAAAGAAATTCTGGTGTGCCTCTGAGTCACACCAGCTGGGAACATGCTTTGGCAGTAACCAGGTGAGCTGACTTGCCACGTGGGATTATTTACTGGAATGCAGGCAGGCACGCGGGAACAGCTGCAGTAGCTTAACTCTGGTTTTGGAACAGCTGACCAGTGAATGGCCTGGGTTTTCTGGCAGAAACAGGTATCTCAGTTGTTTTGTTTTGTTTTTCAGTTGTCTATTAAGGTTGCTTCCAGTAGACGAGAATGAAACCCCGTCGGCTGCTCTTGGTAGCTCCTTGCTACTCAAAATGTGGTAGGAGGATGAGCAGCCTCGGCCCCACCTGGGATCTTGCTGGCCTCTCAGCTCCACCCACACCTGCTGAGTCAGACTCTACACTTCAAAAAGATCTCTGGGCCATTTGTTGCAGTCAAGTTTGAGACCCACTGGACCAGACTAGTGCCTCAGAGTCTCCTGGAGGGCTTGTTGAAACAAAGTGCTGGCCCCACCCCCAGAGTTTCTGATTCAGTAGATCTGGGGTGGGGTCTGAGACGCTGCCTTTCCCACAAGTTCCCAGTTCTTAGCAAAGCAGCCGCTGGTTCAGGGACCTCATGTTGAGAACCTTTGATCCAGACTGCAGAGGGCTGGCTGGCAAATCAGCTGCATGTTGGGAGTCACCTGAGGAATGTTTTAAATGCTGATGCCTGAGTTTGGACCTGAGGTTCAAATGTAAGTGATCTGGAATGTGGCCTGGGATCAGGATTTTTGTAAAGCACTTTGGGTGAGTCCATGTGCAGTAGATTTTGAGAGCTGTATTCTAGTGGATCTGCCCTGTTGCTAACCCACCAGAAGGAACCAGAGCAGAACGTGCCCTTTTGGAAATAACTGGGACCATGAAGAGACTGTCAGTGTTACAGCTCTTTTAGAATTTGTTAGGCTGGGCGTACTGGCTCACGCCTATAATCCCAACACTTTGGGAGGCAAATCCCAAGGTGGGCAGATCACCTGAGGTTGGGAGTTCGAGACCAGCCTGGCTAACATGATGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGTTGGCACATGCGTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGTGTCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTTTGACTCAAAAAAAAAAAAAAAAAAGCATTCATTTAGCAGGTTTTCCAGTTTTTACCAGAAATCGCCCCACCCCCATCCCACCACCCAAACAAGATTTTTTAAAAAGACTGTCCCTGTACACCTTGTTCCTCGGGGTGGTTAAGGCACAACCTCTTTCTATATGAGCTCAGTCACCAGGGATGCTTAGAATTCCTCTATTCCTGGCCGTACCAGATGACAGAAGGAAGCGATTGGCCCTGGAATGACTGGGCTCCAGGTCCCCACCTCCCTCATACAGCCTTGGTCTGGGAAGCCCAGGCTTGATGCGTATGCAGAAGGAAGGCAGCATACATTCTAGACAGAACGATCTAGTAACTATGGGGCTGTCATTTGGGGAGGTGGATCAATGTCCTTATAAAAAATGCTACAGACTATTCTCTGGGGCCCACAGGACGGGACCATAGACTTAATAAACAAAATGGGGACGGTGTACAGAGATCCACAAGTAGAAATTTTCTCAAGGTGCTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTTTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCACCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCTGCCACCACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACGGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCATGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCTGGCCCCCAAGGTGCTTTATTTAGCTTGTTTTTGAAACCAGCTGTGTAACATGAGGGTGTGGCACTAGGACTGAGGGAAGAAACAGCCCAAATCTATAAGATATGGGTCAAGTGACCTTGTTTTATAAAGTCCGGAAGACTCACAGTGGGTTAGATGCTACAGGCACAAGTAACAGATACCCATTCAGACTGGCCTAAACAATAAGGAAATCCATTAAGAAATGGCTCAAGACCAGGTGTGGTAGCGCACACCTATCGTCCCAGCTACTCGGGAGGTTGAGTTGGGAGGATCACTTTGAGTTTGAGGCTGCAGTGAGCCATGATTGCACCACTGCACCCCAGCCTTGGCAATAGAGCAAGACCTTGTCAAAAAAAGAAAAGAAATGGGGCCAGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGAGAGGCCGAGGCAGGCGGATCACCTGAGATTGGGAGTTCAAGACCAGCCTGACCAACATGGAGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGTATGGTGGCGCATGCCTGTAATCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGACCCCAGGAGGTGGAGGTTGTGATGAGCCAAGATTGCACCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCGGTCTCAAAAAAAAAAAAAAAAAGAAGAGAAAAGAAATGGTTCAAAGTCTAGGCCCTCTTCAGAGCTGGCTGATTCAGCTTGCCAACAGTGACATCAGGGTGAGGCTTCCTCTGTCCACAGCATTAGCTGCGAATATCCTCATGGTCACAAGATGGCTGCCAGTGGCCGTCAGGGTGTGTGCTTCCTTGTTCACATCCAGTGGAAGAGTGACAGCCTGCTCCCCTTAGCTCTCTGACACCAATGAGAAGGTGCTAAGAACTTACTAGCAGGCCTTTCCTCATGACCCATTCAACAGGATTGGGTCACGTGCCTATTCCTGAACCACTAATTGGGAAGGGATGGGATTACTCTTAGACCAGTGGTTCTCAACTGAGCATGAGTTTGTCTTCCAGGTGACAGTTGGCCATGTTTGGAGACATTTATGGTTGTCACAACTGGGGTGATGCTACTGGCATCTCATGGGTAGAGGCCAGGGATGCTGTCAAACATCCTACAATGCACAGGACAGCCTCACAACAAAGAATTATGGCCCTAAGTGCCAAGGTTGAGAAAGTCTGCCTTAGACCTGTCAGGGCTGCCCCCAGCCTGGGGTCTGTTTCCCCCAAAACACGCACATCTCAGCGGACAGGGCCAGAATGCACTTTGGGGGCCAGCCACAGCCCCTGCCAGCCTCCCAGTTCCCCCAGATCCTACCCTGGGCTTCCCCTGTAAGAGCTTTATAATGAGATTTCAATTTTATAAAATTATAAGGGGCCTCTTAGGAGTTTTTGCCTGACATATCTTTATGAACCTACCCTGAGTGTTTGTCCCTGGAGAGCCAGGCCCAAGGATACCAATGGCTAGAACCAACAGAAAAGCACAGCTGCCGGCAGGAGGCCTCACCCTCCCGCAGTGTGAGGCAGAGCAGCACAGTGGCTCAGAACAACAGCATGTGCTGGGTGACCTTTGGCAAGTTGATTCACCTCTCTAAACCTCAGCCTTCTGAGCTGCTAAATGGGGCTGTTGTGATTGCTGGATGAGGCGAGGCCTGCGAAGTGGCTGGCATGCAGCAGGTGCTAATGAGTGCTGCAAAGGTGATGTCACGCAGGCAGCTTCCCGTGGCCAGAGAAACATTGCAGAGAAGGGATAAGTAGGGCTTAGTGACTTTGACGGGTCAATGGAAGAATGACCCAAAGAAGGCTTCAAGGCCAGGCCTGCAGTTCTCCACCACAAAGGCCCTCACTGATAGCACCCACTCCCCCACACTCAGCTTTGGGGCCTAGGTCTGGTCACCCAGCTAGAAGCCACAGGACCCTGAGGCGTCCGAGGGTGGGAAGGCTGAGAGGCAGCTGAGACTCCTGGAGGCCGTGACTGGGAAGCCCTCTCTTTAGAAAGGCCATCAGCTTCCTGCGTGGGGGTGACTGGCTCCTCCCGAGAGATGGCAGCCAGGTCTGACTGTGCCCCTCTCTTACAG
Seq C2 exon
ACCCCATGATGGAGCTGACAGGCACTGACCCTTCAGAGCTCGACGGCCAGCAGGAGATGGAGGACTTCGAGGAGAACGCCTACAGCTATGCGAGCGTGGACAGCAGCGCCGAGGCCAGTGTCCTCACTGAACAGGCCATGAAAGAGATGGCCTACTACAATGTGCTATAGCGCAAGCTGGGCCACCCCTAACGGGGGCCGGGGGCGAGGGCATGGGGGTGAGACCCATGGGCTGCAGGCTGCACCTCCTGCAGCCGAGAAACAAGCTACTGCCCCACTGTTCTGAGCCCTCCCTCCCCGAGTCATTTGCACCACTAGGGACCTTTAGACCAAATGGAGACTGTACTACTGGCCCCGGCTGTGAGCCAGCACAGGCCCAGGCATCCCAGCAAGGGAAGGAGAACACGCGAGGCCCAGATCTGGGTCTCCCTGGCCTGCTTCCGTGGGGAGTGGGAGAAGTGGGGCCACTGGGGACAGGTCACAAGGGCACCGGCCCTCGGGGTCTCTCCAGGCCCAGCAGAGCTCTTCAGGGGTCCTGACACTGGAAGAAGAGACCACTTGAGCCATGTCTTTTTCACGGCCAACTCCTGCCTCTAAGGATGTCTGAGCTCCCCTCTGGCCAGTACTGCCCACCTCTACCTTGTCCAGGCCCCCTTCCCCGCCCTGTCGACGGACCGCCAGGCAGGGCACTCTGCCTTCTACCTCCCGGGGTCTCCCATGCGCTCCTCAAGCCAGGTGTGCACGTGGCCCTGGCCCTGGCCTGCAGGACAGCTGGGGGGCACCCAGCCCCCAGAAGACCCCTGTCCTACATCCCTTTCTGGAAGTGAGTGTCCCTACAGTGGATTGCAACACATGTCGTCCACTTCGACCCTAGCTGGAGTGCCTCACCAGGGGGCCCCACTAGGAACAAAGCCAGGACAGGCCCCGCGTCAGGCACACACTAACAAAACCAGAAGCATGGGGCAGGGCAGGGCGGAGTGAGGGCATCACAGGGGACCAAGAAGGGCTGTCCTTGGGGGAGGCCCAGGACCACCTGTCGGGGAGGGGGACCGCAGTCATTTCTCATTCCTCAGTGTCCACCTTGCGACGGGGATAGCCACGAGTCAGCAGCTTCCCGGAAAGAGCAACGTATTTTAAAAAGGAAAGTAAAGCCCACAGAGGGAAATCAAGGGTTTTTTTGAGCAAAGGGGGTCTTCTGAAGGTAACTTATTATTTTTTTCTTTCCAACTGTGTGTCACCTATGACCTTTTCTGATGGAGATGCATTTTCTTTTTCCAAGCGTAAGCTTCCTAATGTGCTGTGCGTGCTTCCTACCCACCCACCCCGAGCAGCCTGGCCGGGCAGGACTGGGGCTCCATGGGGACTGTCACCCTGGCCCTGGAGGTGCAGCCGCTGGCAGCAGCCTCAGCAGGCTGGGGTGGGAGGCAGGAGAAGGCAGAGCTGGGAAGCCCTCCACCCCTGCCTGGCTCCTGCAGTCGCTGACTTGCTCTGTCCCATGTCCCATCCTCGGCTGTCAGGGCTGCTGACTCTGCTCAGCCAACAGCTAGCTCCCTCGCTCGCCTGCTCTCTTCCCCTCTGTTCCCACGCCAGCTCCTGCCCCTGGAACCAGAGATGACAGGCCCAGGGCAGTGAAATAGCACATTCAGGAACTCTAGGGCACCCGGACCCCCCCACCCACTTGCCTCCTGAGGCCTCAGTGGGGAGGGGCAAGCAGGGGTCTTCCCCAAAGGCACAGATGAAGCCACTAGCTTCAGCCTAGAAACCCGGAGAAGGGAACAGCCTGCGGTGGGAGGAACCAATCTGCAGCGCAGCCACCCCCAAGGCTGGATCCTTAAGTGAAGGACCAAGCCAGGCCTCAGGGTGACTGTGATCAGGACTGAGGGGTGGACAAGGTGGCCCAAGTATGGCTTCCAGACCCCGAAGCCCCACGACCTCCCAGGTGCCCGCCATGATGACCCTCAGGTGGCAGTGACCCCGTCACTGTATAAGACATTTTCTCCTGCTGAGCAGAAGGCATCATCCCCTGCAACTACCTCTTCCCACGTCTTTCTCCCCTGGTACCAAAAAGAACCCTGTACCTCTCCTCCTCCTCCTCCCTCCTGCCAGTGCAGTGGCCTTGGTCTTGGAAACTGAAGGGAGAAGGTCTGGCCCCCAGGGTGGGGCTCTCCTTTCCCTCCCCCAGCCCCGCCGTCAGCACTGGCCCTCTGTGAGGTTCGATACTTGAACGCCCCCTGCCCTGTGCCTTGGACCTGGGCAAAGCTAGGAGGAGGAAACAGCACAACTCACAGTTTGAGCTGGGGGGTGGTCTTGGCAAGGCTCCTGTCTGTACCCCTCCCTAACCTTCTCAAAAGAGGTGCACAGCCTCTCGGGTGACTTGGAAACTCCTGGACAAATTCCATTCTAACTTATTTTGACATGTATACAAACCAACTGTTTAGAGATTCCACTTGTGCAAAGCCCTACTGTGTTTTTATGTTCCTGTTTAAAAGAGAAGTTTACTTAGCAATAATTATAAATAAATGAATATTCTTTAGTGAGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140548-ZNF710:NM_198526:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.304
Domain overlap (PFAM):
C1:
PF054957=zf-CHY=PD(45.8=25.4),PF134651=zf-H2C2_2=PD(26.9=5.4),PF069576=COPI_C=PD(56.4=47.7),PF0009621=zf-C2H2=WD(100=18.5)
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)