Special

DreINT0181630 @ danRer10

Intron Retention

Gene
Description
zinc finger protein 710a [Source:ZFIN;Acc:ZDB-GENE-030131-5559]
Coordinates
chr18:26107791-26110160:+
Coord C1 exon
chr18:26107791-26107965
Coord A exon
chr18:26107966-26109730
Coord C2 exon
chr18:26109731-26110160
Length
1765 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TCTCCAATTTATTTCTCCAGACA
3' ss Score
8.21
Exon sequences
Seq C1 exon
GTGTGTGGGAAGTCCTTCAACAGAATGTATAACCTGCTGGGTCACATGCACCTTCATGCCGGTAGCAAACCCTTCAAGTGCCCTTACTGCACCAGCAAGTTCAATTTGAAGGGTAACTTGAGTCGACACATGAAGGTGAAACATGGAATCCTGGACACCTCAAATGAAGGACAAG
Seq A exon
GTAACAACATGCTAATTATGCTAATTTTCTATAGCCTAGAGCAGGGGTGTCCAAACTTGGTCCTGGAGGGCCGGTGTCCTGGAGAGTTTAGCTCTAACTTGCTTCAACACACCCGCCAAGAAGTTTGTAGTATATCTAGTATGAGCTTGATTAGCTGGTTCAGGTGTGTTTGATTAGGATTGGAGCTTAACTCTTCAGGACACCGGCCCTCCAGGACCGAGTTTGAACACCCCTGGCTTAAAGGTTTATAGAACTGTTTATGATGATACTTTGTAGACTTGAGGCTGATTATCTTTCTGCGTCAAGCGGCATGCAACGCAGCTCCAGCACAGCCTTTGCGCAGTCTCAAAGCCCTCACCATGGCTGATCCCCCCCTCAAAAAATGTAACTACACATCACAACGACATGTAGAGCAAGCTCTGTGATTGGTCAGCTTGGTATCTTTGATGAGTGTGGGCAGTGCTGAGAGCCGCAAGTGTCGAGTCCCATGAAGGAGCTCCCAATGGAAACTTGTTTTGTGTTTACCTTATGATTAAATTTGTTGCATGTCCGCCGCATCTCACCTCTGAATGAGGAAGTTTTAGCTAATTTTACAGTCAGCTAGCATTACTCCTGCAAAGAAATTCGACACAGAGGACCATAAAAACTTACTGCCAGCTAGTGTTTCGGAAATGTTTTGCAGAGCAACACAAACAACACGCAGTAGTATAAATGCATGACTATGTGCAAGGCAGGCATTGTGGGTCACGTCAATAACTTGACGCAGAAGTATAAATCACTTAGTGATTTATAAAGTATAAGTCCTTTATGGAGTGGACGTTGAATAAAATTGGATATTTAATATAAATTAAACATTTCTGATATACTTATTACTGTTTTTTTTGTTATTTTATAAAACAAACACTTTACTTGAAGGGGTGTTCAGAAGACTGTCATAATAACTTTATAATTATTAAACAAAATGCGTCACAATGTTTGAGATGTCTTGATTATAAAAACTTGACATACAGTACATCATAACCTGTAGTTGTCATGACAACATTACCAAGACAACATAACTCGTCACACGATGGTCATGAGGCCATTATAATTGTGGTACTTTTCAAACTGAATTTATTATTAAGATTTCTCAATAAAAAGTATCAATACTATGTCAATTTTACAACCGCATCATTAACATTTTAACAACAAATTCAATTCGAACTAATGTAATTGAGGTCAAGAAAAATATTGATGTATGTATGATGTTATTGACCTCATTATTGACGTATGAATGGGCCCAGCCATTTGAATCTTTTTGGCTCGAGACTTCCGGTCGCATTCACTTACATTCATTTTCATTCGTTAAAAGCAGCTTGTTATGCTGCTTGCATCTTTTTATGTATAGTCATAAACACTCTTGTTTGTAGAACAATTAGTTTGATCGTTTTCTGTCGTTTATTATTCCTAGTAATTTCTCCTATAGGAAACTCAATAGAAGTTCTAAAACAATGACAAAAACGATCATTTTTTCGCATTAAAGAATAAGGTTAATAAAGTTCATGACACTTATAATGGCCTCATGACAAGTCATGTTATCTTGGTAAAGTCACATTGTTATAACAAAAGAGTGGTTATGCATGAGGTTTGTACAGTTTTATAAAACACCACCTTCAATTAAAATGTTTCTGCAAATTCAAATTTACATATACACCGAGAGAAAGAGTCAAGCTAGCCATGCTATTAGCCAGGCTTACATTTTTGTGTCTCCAATTTATTTCTCCAG
Seq C2 exon
ACACCCAGCCTGATGCGGAGAGTCAGGAAGATTACGAGGAAGAGAGCTTTGATTACAGCGAGAGGGAAAATCTAGCGAGCAACAACGCACAAGATATGGCCAAACTAGCCAAAATTAGCTACTACAACTACACCAAGGTTCCTGCTCGCTACAACACATCGTAAGCAGCTGACTGAGACACTATGTGGTTTAAGGCTGGGGAAAAGGACTAACGGTCATTTATGTAGTACTCTTGGCTCTGAAGTGAGCCACTGAGGATATAGCCATCATGAAGTGGATGTGCACTGGAAGCCATTTTGGCTCTGAGAAACAAAAGTGACAGCGGATTCATTTTAACAATGTCATTTTACATAAGGGATCATCTTGAAGTATTTTTTCTGTTTTTAAAGCCCATGTTCCTTTATTTGGACCATCTTAAAATGCAGTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014680:ENSDART00000015712:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.220 A=NA C2=0.426
Domain overlap (PFAM):

C1:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCACATGCACCTTCATG
R:
CGTTAGTCCTTTTCCCCAGCC
Band lengths:
352-2117
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]