RnoINT0168618 @ rn6
Intron Retention
Gene
ENSRNOG00000014278 | Zfp710
Description
zinc finger protein 710 [Source:RGD Symbol;Acc:1306491]
Coordinates
chr1:141866106-141870325:+
Coord C1 exon
chr1:141866106-141866280
Coord A exon
chr1:141866281-141869957
Coord C2 exon
chr1:141869958-141870325
Length
3677 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ACTATGCCCCTCTCTCGTAGACC
3' ss Score
9.07
Exon sequences
Seq C1 exon
GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGTCATATGCACCTGCACGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAG
Seq A exon
GTGGGTGGGCTGTGCGCAGTGGACAGAGCAGGATTGACAGCGGCATGGTGCACTCAGGAGTCTCCTGTCCAATTAGAGGCATAGGGAGGCTGGCCAAGGCCGAGACGTCAATGAGGTGGGCTCAGGTCTGGAGAGAGGGGGAACCCGGAGAGCCATCGTGGCAATAACAGGTGGCGGGTATTTATGTCTTCTTCCAAGGACTTACGTGGGCTCACTAAAACAATAATAAAACAATAACTTATACATGTTGAGTGCTGTGTAACTCATGTGACCCTCCCAGGGAGGCTGGCTTTGGTATTATTCCTATAGCGGAAACTGCAGGGCAGAGAGATGAGGCAACTTGATCGTAACACATGAGAGCCGTAGATGTGCCGTCTCTCATCATTATGATGAGGTACCGTGATAACTGGAAATAGTGGGTGGGAAAGCGATGGGGAGGGTGGCACAAGGTCACTTGGAGAGTCTCAGACACTTAGTCATGGTACCTGCTGGAGAGAATACAGCCACATAGTCAGGGAGGGACAGGTGGTCCTGTCAGTAAGTTTTATGAGAGAAACATAAAACAGAAGCCAAGATTTAGGAGATCTAGGTAAAGCAGCAATACACACAATTCTAGCATTTAGGAACTGAGGCAGGAAGATCACTTCAAGGCCAGCATGGCCCTACAGTGAGACCCTGTAGCATTAATAATAGTCTGAGAGAGATTTCCAGAAAGGCTGTGTGCAGCTACACACACCTGTAACTCAAACACTTGTGATACTAAGACAGGACTACAAGTTTGAGGTCAAGTCAGACTACATAAGACCCTGTCTCTAAAGAAAAGAGAACATTTTCTCAAGGATGCTACATCTTGGCCCCTTCCCCACTTCTGTCTGGTCACAGCAGAGCTGACCGCTGGTCTACAATCCCACTGTGGGGAGGTGGCTTCAGATCGTACAGGCAGGAGGCAGCTGAAGGTGCACCCGAGGTTCCTCCCTGAGCCATTACAGATGGTTTTGGAGTATCCAGTCAGTGGCCCAGAGTTTCTGGCAGAGGTGGAGCTGTGGCTTGTTCTGGATAGTCTTTCAATAGTCTTACTATGGCTGTGTTGGTAGATAAGCAGGAACACTATAGCCTACATCTGGATGCTCTCTAGCCCCTTGATACACATTGTCTGGAGTGGACATGTGGGCTTAGCTTTGCCCCAGACTTGCTGAGTGGAAATCCTCATTACCAATGGTTCTCTGTTCCTTGCCTAATGTACCTCCCAGAATCTCCCTAGAACTGGCCTAAACTGCTGGGCTTCCAGCAGTCTGTAGGAGGTTATGGGATTGCCTTCCCAATAGGTTCTCTTGGAATAGCTTTGATATAGACCTTATGAGGTCTCAAATTGGCTGTCCGTGGGAGTCACTTGAAGATTTTCCCTTAATATTAAAGTGTATGGGTTTTTTTGTCTTTGTACCATGGGCCTGTCTGGTGGAGTCCAGGGGAGGCTGTCAGGTCCAATGCAACACCAGGAGTTACAGTTACAGACACCATGTGGGTGCTGGCAGTCATTGCCGGGGCTGTGGGAGAATGCCCTGTGCATTAAGCACTGAGCCATGGCTCCAGCACAGTTGAAGAAATGTTAATGTTGATGGCTGGGTCTGGACCCTGGAGGTGCTGGGCTGTGGTTTGGGTTTTGAAGCCCTTTGGACTGTCCCCTGTGCATCCATGTGAGAGCTTTACTACAGTGGGATTGCCTTATAGCTAGTCGCCCGCAGAGACCAAGCCAGCCTTTGTCCTTTTGCAAATAACAGGAGCCGGTTCTCTGGGGTGAGGGGAACAATCTCTTTCCTCATTTCCAGGAATGGCTAGCATTGCTGCTAGAGCAGCTGGATGCTCCTATGCCTCACCCAGTTCAACACAGTCTTCAACTATATTCCGAGTTCAAGGCCAGCCTGAGGTACTTGCCTGAAGCAATGGACATAATGGAGATAAAGTGGGGACATGAAGTTTGGCTTGCTGTGATAAGCAGTGGTGGAATATGATGGGATGGCAGTGGGCTTTGAACAGAGAACCCAGGTTTTGGTTCACTGGGTCAGTTAATCTTGCTTTCAAGGTCAAGGGGTTCTGTGTGCCGGATTTGGTGATTCAGCAGTTTGGAAGAATTGGAGATAGCTAAGTAGGTAGTGCTTGCCTAGCATGCACAAGGCCCTGGGTTTGACCCCAGCACCCCATAAACCTGATGTGGTGGCACACCACTATGATCTCAGCATTCTGGAGGAGGTGGAGAGGAGAGGACCAAAAGTTCAAGGTCATCTTCAACTATACATTGAGTTTGAGGATAGCCTTAGCTACATGAGATCTAGTCGAGAGAGACAGAGAAAGCCATGCATGGCAGAGCACACCTTTGTGATCTCAGCACTGGAGAGGCAGAGGCGGGCAGTTCTTTGAATTCAAGACCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCTAGGGCTACAACAGAAACCCTATCTCAAAAAAAGAAAAAAAAGGCAGAGAGAGGGACTGAAAACCTCAGCTATCTTTAAAGTCAGGTGAATATCAGGGTCAGGTACCTCTGTGAGACCCCACAGCACTGGCATTTTCTCCTGCACTCAAGGTGTAACATAGCCACTAGAACACTGCTTCCTTGCACATCCAGGAAAGGAACAAAAGCTGACCTCCTCCTTTAAAACCAATAACTCGCCAGCAAGCATTTCCTTCTGACCCAGTGGTCAGAATTAGGTTACAGGCCAATGCCTTAGCTACTCATTGGCAGAGGAGGGTGACTTTGACCCCCAGGGGATAGATATATGGATGTCAGAACTGTTATAGAAGATACCCCTGGCATTAGATGGGAAGAGTGCAGGACCCTGTGATGTCCTGCAGTGGCCTGCCACAATCATGGCCCCAGCCAACACTGATGCTAAGGTTAAGATGCCCCCTTGGACCTATCAGTTTGAGCCCTGGGCTGGGTCTGTTTCCCCCTAACCACCAGTGGGCAGGAGCAGAACCCACTCCACTGGTGAGCCTCAGCCCCTGCCAGCCATCCAGGACTCCCGGTTCATACCAATCCACATCTCAGGAGGCACTCGTGTCGAAATAGCAAGCTTTATAGTAAGTTTCCAATTTGACAGAATTACAAGGCACCAGCACCTCTCAGACATCCTCCTGTCTCCAGAGACACTTTAGCAACCTACCTTGGCCAGAGTTTGTCCTTGGAGAGCCCAGGGCCAGGGTGGGGCTGGTTTGGTGCAGTAATGTGGAGAAACCACCCCTGCTGGTGCTCGGGGTAGAGCTTTGCAAGTTCACGGGAGCACTTGTGAGATGACTTTGGGAACATGGGAAGAGATGACCTTTCAGTCTACACCCGGGGGTTGCGGGCAAACATTGGATGAGGTGAGGTCTGGAAAGCACCTGGCATGCAGTGGGCACTACATGAGTCCCATAGCAAAGGGGGAACCAGTGACAGACATGGCAGATGACCAGGAGGGCTCTGTGATCTAGCAGGGGCAAGGCTACATAATCCAGAGGTCAAGGTCAGGCCAGGGATCTGTTCTGCCCAAGGCCCATGTACACCACCTGGATGGGGAGACCTGGCCAACAGAGGCTGGACTTTAACCCCCACCCCCTCCTGCAGGACGCTGAGGATGCCCGGTGTTTAGGCCTAACTATGCCCCTCTCTCGTAG
Seq C2 exon
ACCCCATGATGGAGCTGGCAGGCCCCGACCCCTCTGAACTTGACAACCATCAGGAGATGGAGGACTTCGAGGAAAACGCCTACACCTACAGCAGTGTGGACGGCAGCACGGAGGCCAGCGCCCTCACTGAGCAGGCCATGAAAGAGATGGCCTACTACAATGTGCTATAGCGGGCTGCTGAGTGGGGGAGGGGGGGGCGCAGGGTGAGACCCACCTACTGAGGGCTGCACCTGTGCAGTCCAGAACCAAGCTACTGCCCACTGCCCAGCCCCCCTCCCCCCCACCCTCAGTCACTTGCACCACTAGGGACCTTTAGACCAAATGGAGACTGTACTACTGTCCTTGCAGGGAGCTGGGCGCAGGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014278:ENSRNOT00000064034:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.379
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]