BtaINT0166009 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019174 | ZNF710
Description
zinc finger protein 710 [Source:HGNC Symbol;Acc:HGNC:25352]
Coordinates
chr21:21893977-21899698:+
Coord C1 exon
chr21:21893977-21894151
Coord A exon
chr21:21894152-21899239
Coord C2 exon
chr21:21899240-21899698
Length
5088 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
GACTGTGCCCTCTCTTGCAGACC
3' ss Score
11.91
Exon sequences
Seq C1 exon
GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGCCACATGCACCTTCACGCGGGTAGCAAACCCTTCAAGTGCCCCTACTGCTCCAGCAAGTTCAACCTCAAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCGGCCTGGACAGCCAAG
Seq A exon
GTGGGTGGGCCACACGCCGAGGACGGAGCAGGAATGGTCCTGTCATGGCGCACTCAGGAGCCTCCTGTCCAGTGAGGGGAGTGGGGAGGCTGGCCAGGCCTGAGACCTCACTGGGGTGGGCTCAGGTCTGGAGAGAGGGCTCCCCGGAGGGCCATCAGCGTGATAACGATGGGACGTTTATGTATTCTCCAAAGGACTTACGTGGGCTCACATAAACAATAATAAAAAGAATATTTGTTGAGTGCTGTGTGCCAAGCCTTTATTAACTCATGTGACCCTCACTTCGAGGTTGGCTCTGTTATTATCACCATTGTACAGATGCAGGCACTGAAGGATAGAGAAGTTAGGGAACTCATGCAAGATCATCACTGAGACAGGGCATTTTTAACACATTATTTGACCGGAGATGTGTTAATATGTCTTTTATTACCCAGACGTTTTTGTCTGGAGACATATCAATATGTTTTTAGAGAGTGATACAATTAACGTCACCATGCAAAGTTATTAGAGCTTAAAACTGATCAAGGGTTCATTATACAATTTACGATTGTTATAATTCACATTTTGCTCTGTTAGATTTTTGTTCCAACCTTGTGTATGTTATAAACGCAAGTTTATTACCATAAAATTTCAAAAATGATGCATTATAAAATTTTGAGTAAAACAAGAATTTTTCGGTGAATTTTATGCAGTTACTTCCTCTGATTGTCTAAGCAACATAAATAATAGTGTCTCAGAAGATGATAGTTCTTCAGAATATAGTTCTGATTCAGAATGTATTAGACCAACAAAAAGACAAAAGAAAACCTTAGTGTTTGGGATATTCAAAATGAAAATGAAACTCATAGTGCTGGAGAAGACTTTATAGGTGTGTCAGGTATAACTATTGAATGTAATAATCTGCAAAGTGTTAGTGAAATAACGGAATTAATATTTGACTGGCCAAAGTAAAAATAACTGGTCAAAGGCATTAGTTTCTGCAAAAATCCCCCAGTTTATAATGAGTTTAAAAATGGATGGGAAGGAAAGTAACAAAAGGGAAAATGCCAACTGAAAGATAAGGGAGAGCCAGGTGAGGTCACAAGCCCAAGTACAAGTGGGAGGTTCTGTGGGCATGCAAAAGGGAGCCCTGAGCTTCCCAGTGGCCAAGGCAAAAAGGGTAATACAGTCAGTCACACTCTTCCTAGTGCCTGGCGGAAGGAATGCAGCCCACATACTCAGGAGACTTTTGCTCACCTCTGCAGTTGGCGGAGGGTTCATTGGCTGTTTGTTATAACATCCCCACGTGTTAGTGATGACCTCTCCCCTCAACACTGGTCAGTAGTGGAAGCACCTTCTTCTTTTTGGCCTCATGGGGAGGAGACACTAGAGATTCTACAGGAAGGAGTAGACAGCCACACTTGCAGAAGGTTCCTTGTATAGTCTGGAGCTATTTGACTTTTCTGGAGTTTCTTCCAAGATGCACAGCTAGGAATGTGTGTTGACAATCACTGGGTGGGTTGACTTGCCATGTGAGGTTACTCACGAGGAGCCAATCAGATGCTGGGGCATGATGGAAATAACCCTGCTTTAGCTTTGGAACAGTGAGTGGCCTGGGGTTTTCTGGTAGAAACAAGTGTCCTCAGTTTTCCATTCTCCCTGAGTGAGGATGGAATGCTGTTGACTGCATATAGATGCTCTGTTGCACCTTCTTCCTTAGCATGTGGTTCTGGGGCCAGCAGTGTTGGCATCACCTGGGATCTTGCTAGAACTGCAGACTCACCTCCACCCCAGACCTGCTGAATCAGGATCTGCATTTCGGATAGATCCCTCGGTGATTTGTTTGCACTGGAAAACTTGAGAGGCATTGAATGAAGTGATGGTTTTCAAATTTGAGCCAGGGAGCATGAGAATCACTGGAGGCTTGTTAAAGTGCTGAATCCCACCCCCCAGAGCTTCTCATTCTGTAGGTCTGGAGTAGGGTCAGACCATTTGCATTTCCAAGTTCCTAAGTCAAAGGGAAGCTACCGGTCAAGAAACTCAAATTGGGAACCTCTGATTCTAAGCTCTAGAGAGCCGTTCTTAAACTTGGCTACACATTGAAATCACTTAGAGAAGTTTTAAAGTGCTGATGCCTGAGTCTCAACCACAGAGATTCAAATGTAATTGATCTGGAGTGTGGCCCAGGATCCGAATTTTTTTTTTTTCTTTTTTAAGCCCCTTAGTTAATTCTATGCAGAGTAGAGTCTGAGAGCCAGTACTCTAGTGCATCTGCTAGGAAGCAAACCCAGCAGGAGGGACAGAGCAGGACTGGTCCTTTGAAAGCAGCTGTCCCTACAAACCTCTCTTCCAGGGTGTGGCTAAGGCATAAGCTCTTTCTATCTGAGGTCAGCAACCAAGGATGCCTACAATGGCTTTCTTCCTGATTGTACCAGATAACAGACAGTAAAGCAGGGATTGGCTGGGGCCCAAGTCACTCATATATAACCTTGGTCTGAGAAGCTCAGGCTTGATCTTGTGCAGGAGGAAGGCAGCATACATTCTAGATAGAGCTATCCAATAAACTATAGGACTGTAATTCAAGAGGTAGATTAATGTTTTTGCAAAATAAATAAATAAATAAATGGTACAAATTGTTCCCTGGGGCCAACTGGAACTGCCAAATAGAGTTAATAAAAAAAGTTGGGAGGGTAACAAGTGACTCGAAGGTAGAACTTTTTCCTGGCTTTATTTTGTTGTTGTTGTTGAGTTGCCAAGTTGTGTCCAACTCTTTGCGACCCCATGGACTGCAACATACCAGGCTTCCCTGTCCTCCACCATCTCCTGGAGTTTGCTCAAATTCATGTCCCCTGAGTCGATGATGCTATCTTTCCATCTCATCCTCCGTCCCCGTCTTCTCCTACCTTCAATCTTCCCCAGCATCATGGCTCTTCACATCAAGTGGCCAAAGTATCAGAGCTTCAGCTTTAGCACCAGTCCTTCCAATGAATATTCAGGGTTGATTTCCTTTAGGATTGACTGGTTTCATTTCCTTGCAGTCCAAGGGACTCTCAGGAGTCTTCTCCAGCACGACAATTTGAAAGCATCAATTCTTCAGCCTTTATGTAGCTTATTTTTAATCAGCTATATGATAGCTGATTAAAGTGTGCCACTAGGATTTGAGGAAGAAACAGCCTAGGGTCTATAAGACGTGGTGCAGTTGACCTTGTTTTATAGTCAGAAGACTCAGTGTGTCATATGCCATGGACACAACAGACACCCCAATCAGACCAGCTTAAACAATAAGGAAATAAATGAAGAAATGATTTGCAGTCCAGGTTATCTGCAAAGTTGACTGATCCAGCCCCTCAGCAATGACAGGGTGAGACTCCCTCTCTCCACAGCATTGGCTGTGATTTTCCTCATGGTCACAAAATAGCTGCCAGTAGCCTTTAGGGCAACATGCTTCCCTGTTCACCTCCATTGGAAGAGCAAGAGCCTGCTGTCCTTTGCTCTATGAAACCAATGAGAACATTCTCAGAACTCACTAGTAGGCCTTTCCTCATGATTCATTGGCCAGAATTGGGTCCCATTCCTCATCCTGAGCCACTCATTGGCAAGGAGTGGGATTGCCATTCAATCAGTGATTCTCAATGGGGGACATTTATTTGACCATGTCTAAGAGACATTTGGGGATTCCCTGGTGGCTCAGACGGTAAGAATCTACGTGCAATGCAGGAGACTCCGGTTTGATCCCTGGGTCAGGAAGATTGCCTAGAGGAGGAAATGGCAACTTACTCCAGTATTCTTGCCTGGAGAATCCTATGGACAGAGGAGCCTGACGGGCTGCAGTCCCTGGGGTCGCAGAGTCAGACACGACTGAGCAACTAATACACAAGAGACAGTTGGGTATCACAGCTTGGGTGATGTTATTGCTATCTAGCTGGCAGAGGCCACAGATGCTGTGAAACATCCTACAATGCACAGGCCAGTCCCCCAAAACAAAGACTCATGGCCCAAGGTGTTAATGATGCCAAGGTTGAAAAACCATGCCTTAGACCCATCAAGGCTACCCCTGGGCTGGGTTCTGTTTCCTCCCAAATACATCGCATCTCCTAGATAGACGGGGCACAATGCACACTGGGACTCAGCCACAGTCCCTGCCAGCAAGCCTCCCTGTGTCCTCTGGGCCTCCCTCCCTCCAAAACTCATCAGAAGGCAGCCCCACCCAGGCCTCCACCTCTGTGGAGTTTTCTATCTGGCTTTGTTCCAACAGTAAGAGCTTTATAAAAGATTTCAATTTGATAAAATGACTGGAGGCCTTTTAAAAGAGTTTTTATCTCATCATCTTTGTTTACCTACCTTGAGTGTTTGGCCTTGGAGAGCAGGGCCAGAGGATACAGTTGGCACCAGAGGAAACAGCCCTTTGAGATAGTCACAAGTAGATCAAAACAATAGCACTTGCTGGGTGCCCCTGAGCAAGTTGATAAACCTCTCTGAACTTGCTTTTGCTCTCCTAAATGGGGTCGCTGTGAGCATTCAGGAGATGATACATGTCACGTGCCTGGCATACAGTAGGTGCCAAATAAGTGGTGTGGCCAACATGATACAGCACAGGAATCTTTCATATGGGAAAGGGGATTAATTAGTCATGTTGCAAAGAATAAATAAGGGCTTAGTGACTTAGGGGTCTTCCCTGGTGGCTCAGATGGCAAAGAATCCACCTGCAAAGCGGAAGACGTGGGTTCGATCCCTCAGTTGGGAAGATCCCCTGGAGAAGGGAACGGCTACCCACTCCAGTATTCTTGCCTGGAGAATTCCATGGACAGAGAAGCCTGGCGGGCTAGTCCATGGGGTGGCAGAGTCGGAGAAAACAGCGACTTTCACTTTCATGACTCAGGAGGTGCAAGAGACCCCCCCAGAGTTCAAATCCAGTCCTGAACTCACTCGGCACACATTTGAAAAGCCACGGGAGTCAGTCAGGTCCCCCCAGAGCAGGGCGGTAGAGGAAACCACTGAGTCTTCTGGAAGCCGTGACTAGGAACCACTCCTTTAGTTCTGCTTCCTGTGTGGGAGTGACTGGCCATTCTCACAGGCAGCAGCTAAGCTTGACTGTGCCCTCTCTTGCAG
Seq C2 exon
ACCCCATGATGGAGCTGACGGGCACAGACCCCTCTGAGCTCGACAGCCAGCAGGAAATGGAGGACTTCGAGGAGAACGCCTACGCCTACGCGGGTGTGGATGGCAGCGCCGAGGCCAGCGTCCTCTCCGAACAGGCCATGAAAGAGATGGCCTACTACAACGTGCTATAGCACAGGCCCGGCCGCCCGGAACGGGCGAGGAGGGCGTGGGGCGTGCCGGCTGCCTCCCTGCAGCTGAGGAACGAGCTGCTGCCCCACTGTCCTGAGCCCTGTCCTCCCACTTGGTCATTTGCACCACTAGGGACTTGGAGACCAAATGGAGACTGTACTACTGGCCTCAGCTGTGAACCCAGCACAGGCCCCAAGCATGGTGGGGAAGGAAGGATGACCCGGGAAGCCCAGGTCCCCATCTCCTGGGCCTGCTGCTGCAGGAAAAATGTGGATGGGGGCTGTTTGGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019174:ENSBTAT00000025518:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.304
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]