MmuINT1035712 @ mm10
Intron Retention
Gene
ENSMUSG00000048897 | Zfp710
Description
zinc finger protein 710 [Source:MGI Symbol;Acc:MGI:1921747]
Coordinates
chr7:80086434-80094173:+
Coord C1 exon
chr7:80086434-80086608
Coord A exon
chr7:80086609-80090334
Coord C2 exon
chr7:80090335-80094173
Length
3726 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ACTGTGCCTCTCTCTTATAGACC
3' ss Score
11.62
Exon sequences
Seq C1 exon
GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGTCATATGCACCTGCACGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAG
Seq A exon
GTGGGTGGGCTGTGCGCAGTGGACAGAGCAGGATTGACAGCAGCATGGCGCACTCAGGAGTCTCCTCTCCAATTAGGGGTGTAGGGGGGCTGGCCAAGGCTGAGACGTCAATGAGGTGGGCTCAGGTCTGGAGAGAGGGGGAACCTGGAGAGCCATTGTGGCAGTAACGGGTGGGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACAATAACTTCTACACGTTGAGTGCTGTGTAACTCATGTGACCCTCCCAGGGAGCCTGGGATTATTCCTATAGTGGAAACCACGGGGCAGAGAGATGAGGCAACTTGATCATAACACATGAGAGCCATCTCTCTCGTCATTATGATGAGGTGCCGTGATAACTGCAAGTAAGTGAGTGGGAAAGTGACAAGGTGGGGGACACAAGGTCACACCTCCGGAGTGCACATGGAGATTCTCAGACACTCAATCAGTCATGGTACCCGCTGGAGAGAATACAGCTACATAGTCAGAGAGGGACAGGTAGTTCTGTCAGCGAGTTTTATGAGAGAAACCTAAAATAAATGATAAATGTAGGAAAAATAATTAAAACAGAACCCAAGATCTAGGAGATCTGGGTACTTCGGCAGTACACACAATTCTAGCCTTTTCCTACCGAGGCAGGAAGACCGTACTTCAAGGCCAGCATGGCTATAGAGTGAGAGAGATCTCCAGAGAGGCAGGTGCAGCTCCACATACCTGGAATGCAAGCCCTTGGGATACAGAGGCAGGATGACAAGTTTGAGGTCAAGCCAGACTGAATAAGACCCTGTCTCTAAAAAAAAGAAAAAAACCTGGAGGATGCAACATCTGGATGACTGTTATGAGACGTCCCCACGTCTGTCTGGTCGCAGCAGAGCTGACCATTCTATTGTGGGGCGGTAGCTTTCAATTGTACGGACAGGAGGCAGCTGAAGGTGCACCTGAGGTTCCTCCCTAAGCTAAGCCTTCAGTGTGTTGGCAGCAGCTAGGTGGGTTGACTAAGCCACTACAGACTGCTAGGGACTTGGATTTGGAGCATCTGGCCAGTAAATGGCCTAGAATTTCTGGCAGAGGTGACATTGTGGCTTGTTCTAGGTAGCCTTTCAATAGTCTTACTATGGCTATGTTGGTAGGTAAGCAAGAACCCTATAGCCTACATCTGGATGTTCTCTGTAGCCCCTTGATACACATTGTCTGGAGTGGACGTGTGGAGTAGGCTTAGCTTTGCCCCAGACCTGCTGCTGAGTGAGAATCCTCATTACCAAAGGCTCTCTGTTCCTTGCCTGATGTATCTCCCTAGAATCTCCTCAGAACTGACATAAACTGCTGGGCTTCCAGCAGTTTCTAGGAGTGGGATGAGGGGATTGCATATCCAACAGGCTCCCCTTTGGATAGCTTTGATATAGGATGACATCTCAAATTGGCTGCCCATGGGAGCCCCTTGAAAATTCTCCCTTAACATTTATATGTATGGGTTTTTTGCTTTCATGTATGTCTGTTTGCCACAGGCTTGCCTAGTGGAGTGGGGGGGGGGGGGCGGCTGTCAGATCCGCTGGGGCTGGGGTTACAGACACAGACACCACGTGGGTGCTGGCAATCATTCCGGGGTCTGTGGGAGAATGCCTGTGCATTAAACACTGAGCCATCTCTGCAGCTCAGTGAAGAATGTTGTTAATACTGATGGCTGGGTCTGAATCCCGGAGGTGCCGGGCTGGGGGTTGGGTTTTGAAGCCCTTTGGACTCTTCGCTAAACATCTGTTGGGGAGCGTCACTACAGTGGACTTGCCTTGCAGCTAGTCGCCAGCAGACACCAAGCCAGCCTAGTCCTTTTGCAAACAAGTGAAGTCATCAAGCCTGGTTCTCTGGGTAAGGGAGCAATCTCTTTCCTCGTTTCCAGGGATGCTTAGCACTGCTGCTAGAGCAGCTGGATGCTCGTATGCCTCTTCTAGTTCAACACAGTCTGCAATTCTATGCGGAGTTCAAGGCCAGCCTGAGGTACTTGCCTGAAGCAATGGGCGTAATGGAGACAAAGTGGGCACACCAAATTTGACCTGTAATAAATAAGCAGCGGTGGTATATGATGGGATGGCAGTAAGAACAGACGGAGAACCACCTAGGCTTGGTTCAGATTCAACAGTTTGGAAGTATTGGAGATAACTCAGTGGGTAGCGCTAGCTTAGCATGCACAAGGTTTGACCCCAGCACCCTATAAATTGGGTGTGGTGGTGCATTTTGGAGGTGTAGACAAGAGTACCAAAAGTTCAAGGTCATCTTTAACTATATAATGAGTTTGAGGATAGCCTGAGCTACATAAAAATCTAGTCAAAAGAGAGAGAAAGCCATGCATGGTGGAGCACATCTTTAATCCCAGCACTGGGGAGGCACAAGCGGGCCAGCCTGGTCTAGTAAGTTCCAGGACAGCCAGGGCTACAACAGAAACCCTGTATCCAAAAAAATAAAATAAAATGAAATGAAATAAAATAAAATAAAATAAAATAAAATAAAATGCGGAGAGAGGGATTGAAAGCCTGGGCCATCTTTAAAGTCAGGTGAATATTATCAGAGTTAGGCTACCTCTGTGAGACCCCCACATGACTGGCATTTTCGTTTGCACTCACGGTATAACAGTAGCCACCAGGACATTGCTTCCTGGCACATCCAGGAAAGGGACCTGTCCTCCTTCTTTAAAATCAATAACGTGCCAGCAAGCATTTTCTTCTGACCCAGTGGTCAGATTTAGGTTCCTAAGCCACTCATTGGCAGAGGAGGGTGATTTTGACCCCCAGGGAATAGATAGATATATGCATAGATATAGATAACTGGGAAGATACTCCTGGCATCAGATGGGAAGAGTGCAGGACCCTGTGATGTCCTGCAGTGGCCTACCACAAAGGATTGTGGCCCCAGATGTTAGTGATGCCAAGGTTGAGACGCCCACCTTGGACCTATCAGGGTGAGCCCTGGGCTAGGTCTGTTTCCCCCAACTACCAAAGTTCTTCAGTGGGCAGGGGCAAAACCCACTCCGTTGGCCAGCCTCAGTCCCTACCAGCCAACCCCCACCCCCACCCCACCCCCCGGGCTACTTGTTCATACCAGTCCATGTCTCTTCAGGGGGCACTCTGCTATGTCACAACAGCAAACTTTATAGTAAGATTCCAATTTGACAGAATTACAAGGTACCTCTCAGACCTCCTCCTGTCTCCAGAGATGCTTTGACAAACCTACCTTGCTTGGCTGAGTTTGTCCTTGGAGAGCCCAGGACCAGGGTAGGGCTGGTTTGGTGCAGTAATGTAGAAAAACTACTCCTGCCGGTGCTCCTGAAGTAGAGCTTTGCAAGTTCACAGGAGCACTTGTGGGATGGCTGGGAGGTTGATCAGCCTTTCGGTGTACACGATGAGGTTGCAGGCAAACATTGGATGAGGTGAGGTCTGGGGAGCACTTGGCATGCAGTGGGTACTACATGAGTCCCATAGCAAAGGGGGAACCAGTGATAGGCATTGCAGGTGACCCAGGAGGGCTTAGTGACCTAGCAGGGACAAGGCCCTTCCTTGTACACCTAGCAGTAGGGTTTGTAACTGCCTGGATACGAAGACGGAGGAAACAGAGGCTGGACTTTAAGGTCCACCCCCGTTCCCCCCTTCTTGCAGGATGCTGGGGATGCCCAGTGGTTAGGCCTAACTGTGCCTCTCTCTTATAG
Seq C2 exon
ACCCCATGATGGAGCTGGCAGGCCCTGACCCCTCTGAACTTGACAACCATCAGGAGATGGAGGACTTCGAGGAAAACGCCTACACCTACAGCAGTGTGGACAGCAGCGCGGAGGCCAGCACCCTCACTGAGCAGGCCATGAAAGAGATGGCCTACTACAATGTGCTATAGCAGGCCGCTGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTACTGCCCACTGCCTGGCCCTCCTCCCCCCCAACCCTCAAATCATTTGCACCACTAGGGATCTTTAGACCAAATGGAGACTCTACTACTGTCCTTGCAGGGAGCTGGCCACAGGCCTAGGCATCCCGGTGAGGGAAAGGTAACCAGGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGGGGGAATGCCAGTGAGGCCTCTTACAGGCACAGACTTAGAGGTCTTCCCCAAGCCACCTCAGGCGCGGAGGCGCTCTCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTTCTGCACCGACTCTGGCCTTTAAGGACATCTGAACCCCTGCACTGGCCGACACTGCCCACCCCCACCCTGGTCAGACCCAAGAACCTCTTCCCTCCCCCTATCACTCAAGAGCCAGGCAGGGCACTCTGCCTTCTACCTCCTGGGCCTCCCCTTGCTCCATGCAGGCATGCATGCGGCCCTAGCCCTGGCCCTGCCTGTCGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGCACCCTCCCAGCTGGCCTGCAGAGCTCCCCTGCCCCAGCCTCGTTTGAAAGAATGTCCCTAATGTGCATTTCAACACAGTTCATCCAGGTCTGTTCCAAGCTAAGGTACCAACCACAGGGTCCTCACCAAACAAACCCAGGACATGCCCTGCATCTGGCAAGCATTAACAAAGATAGATGGCGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTGTCCTCAGGGGAAGCCAAGGAAGACCACCCGTGGGAAGAGGGGAACTAGAATGGTTTTGGTTTTGGTTTTTTATGAGCAAGCAGGTGTCGTGGGGAGTGGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAAGAGCAACATGTTTAACTGAAGACCAGAGAGAGGGAGGGGAAAATTCTGTTTGCAGCAAGAAGGGTATTGTGAAAGAAATTTATGTTTTCCTTTCCAACTCTCCTGTCTATCATCTTTGATGGAGAGGGGTTTTTTTTGGTTTCTGTTTCTATTGGTTTGTTTTGGGTTTTTTTTTTTTTTTTTGGTTTTTGGTTCGTCCAAGCCTCAGCTTTCTTGTGTGCTGTGTGTACTTCCTGCCTCCCTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTGGCCCAGGTGTATCACTAGCTGGGAGCCTCAGAAGGCTAAGGCAGGAGGGAAGTGGGGGAGGCAGAGAACCTACCCGGCCCTCTCCAGTCAGCTGGCCCTCTTCACCTGTCCCCTCCCCTCCCCCCTGTCCTCCATCCATAAGCTCGCAAGCACCCAAACCCCTGCCCACAAATCCCAAGGCCCCCAAGGGGAGGAGCAGGCGGGACTAACCCCAAAAAGGCATAGATGAAGCCACCAGCTTTGGCTGAAAAACCAAGAGGGGGAGACCAGCTGAGGCAGAGGGTGTTGATTCGCAGTGTGACAGCCCCCAAGCCAGGCCTCAGGGTGACTGTTCAGGACTGGGGATGAGGGGGACACAGTGGCCCAGGTGTGGTTTCCCATGGCTCCCGGCCTCCCAGGTGCCCATCATGATGACCCTCAGGTGGCAGTGATTAGCTATCACTGTACAAGACATTTATTTCTCCTGCTGAGCAGAAGGCATCACCCCTGCAAACTACCTCTTCCCACAATGACTTTCTCCCTGGTACCAAAAAGCACCCTGTACCTCCTCCTTCTTCTCTTCCTCCTCCTCCTCTCCTGCCAACGCAGTGGCCTTGGTCTTGGAACAGAAGGGAGAAGTCTGGCCTGGGTGGGGTCTCCCACTGTCCCCCAGCCTGCCATTGGCACAACCCCCTTGGGGATGCCATACTGAAAAAGCCCCTGCCCTCGCCTTGTGCCGGGCAAAGCGGAGAGGAAGGCACAGCACAGTACACAGTTGGAGCTGGAGGTGGTCCTGGCACAGCTCCAGCCTCACCCCTCCCAGGCTTCTGAAAAGGGTGACTCAGAAGCCCTGGCCGAATTCCACTCTAACTTATTTTGACATGTATACAAACCAACTGTTTAGAGATTCCTCTTGTGCAGAGCCCTACTGTGTTTTTATGTTCCTGTTTAAAAAGAGAAGTTTACTTAGCAATAATTATAAATAAATGAATATTCTTTAGCGAGGTGACTGTACGTGCTTCTTGGTGCTCTTGGAGGCCCTTCCCCCCAAGGAGGTCCCAACAAGGCTCCCTAGTCACATGCCAGACAGCATCCCCCTCTGGAACTACAAGACAATCTCAGCCACCTGACCTGCCAGAGAGTTGGGGGGTGGGTGGAGGAGAACATGCTCCGAGTCCCAAGGGCAGGTTTTAGGTCTCTGTAGCCCGGATCTACCTGTGAAGGCCTGGGACAACAGATGAGTTCTCCCACACACAGCTTCTTTTTCCCGGTTGTTTTGAGACTTTTTACAGCAGGCTCACACTGTCTACCTGTGTCTGGCCTAGAACGCAACCATCTTCCTGTCTCAGCTTCCTGAAGCAAGACTACACGTATGTGTGTACACCTGGCCTTTTCAGATTTCCGGCCTCCCCAGTGCTGGGATTTCGGGCATGCACTGCCATCCCTGACTTGTTTCCAAATATTCCCACTCTTGGATCTGCAACATAAAACCTGTGGCTAGAGGCAAGCGATAGATAGTTGGTTAAGAGCACTTGCTGCTCTTCCAGAGGACCCAGGTTCAATTCCTACCACCCACATGGCAGCTCAGCAACTGTCTCTAACTCTAGTTCTAGGGTCTCCAATGCCCTCTTCTGACTTCAGTGGACCCTGTATGTACATGGCACACAGATATACAAACAGGCAAGATACCCCATAAAAATACTAAAATAGTCTTTAAACTGGAGGCTAGGGCTGTGGATCAGGCTTGCTGGGTAAAGTACTTGCCTACTATTCAGGAGACCACCCTGGGTTTGATACCCAGCCCTACATACTCAGTGTTGTGATACTGCCCATGATAACTGCATCCAGGAGGTGGAGACTGGAGGCTAAGAAGTTCAAGGTCATCCTTAATTCTATAGAAATTTGAGGCGAGTCTCGGATACACAAAACCATGTCTTTTAAAAAAAAAAGAAAAAAAGGCAGGCAATGGGGATGAGAATTCAGCTTAAGATCTTACTGATGGGGGCTGGAGAGATGGCTCAGAGGTTAAGAGCACCGACTGCTCTTCCAAAGGTTCTGAGTTCAAATCCCAGCAACCACATGGTGACTCACAACCATCCGTAATGAGATCTGACACCCCCTTCAGGTGAGTCTGAAGACAGCTACTAAATAAATCAAAAAAAAAATCTTACTGATAAAATGCTTGCTAAACTCAATTCCCAGCACTGACAACAACCAACTCCAGATACAGAGAACTGACTGCATTATCAAAGTTACCCTAATCTCCAGCAGGACCAAACAAGCAGAAAGAGAAGTCACTGACTGCACAGCGACAGTGCTTTCCATTGAGTGTATATGGGCTTTGGAACAACATTTCCACATCACTTTTCTAGTTGTGCCAAAGGAGAAACCTGAAGGATGGGAACAGGGGATCCCGGACACACAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048897:ENSMUST00000164056:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.356
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types