GgaINT1030669 @ galGal4
Intron Retention
Gene
ENSGALG00000027434 | ZNF710
Description
zinc finger protein 710 [Source:HGNC Symbol;Acc:HGNC:25352]
Coordinates
chr10:19517465-19518020:+
Coord C1 exon
chr10:19517465-19517639
Coord A exon
chr10:19517640-19517847
Coord C2 exon
chr10:19517848-19518020
Length
208 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TTGTGTGCGCTGTGCATTAGATC
3' ss Score
4.86
Exon sequences
Seq C1 exon
GTCTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGCCACATGCACCTGCACGCGGGCAGCAAGCCCTTCAAGTGCCCCTACTGCTCCAGCAAGTTCAACTTGAAAGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGCGTGATGGACATCAGTCTGGACAGTCAAG
Seq A exon
GTAGGTGTGAGCCGTGCAGGAGCTGTGCTGGGCTCTGCGTGTCGCAGGCTGGGTGCTGTGCTCGCTGCTGGCTTGCTGCAGGAGCAGGACCGAACCACAGTGCCCATAGCGAATGCTCCTTGGGTGCTGTGGTGGGGAGGGGGCCGCTGTGGGGAGGGGGCCACAGGGCCCCGCGGGCTGATAGCGGCTTGTGTGCGCTGTGCATTAG
Seq C2 exon
ATCCCATGATGGACCTGTCTGGGGCTGAGCACACCGAGCTGGACGGGCAGCAGGAGATGGAGGACTACGAGGAGGAGAACTCGTACGGCTATGAGGGTGTGGGGAACCCCCCGGACGACAGCGTGCTGGCAGAGCAGGCCATGAAGGAGATGGCGTATTACAACATGTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027434:ENSGALT00000044315:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.596
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGCATGTACAACCTGCTG
R:
ATCTCCTTCATGGCCTGCTCT
Band lengths:
308-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]