Special

MmuINT0179774 @ mm9

Intron Retention

Gene
Description
zinc finger protein 710 [Source:MGI Symbol;Acc:MGI:1921747]
Coordinates
chr7:87231320-87237637:+
Coord C1 exon
chr7:87231320-87231494
Coord A exon
chr7:87231495-87235220
Coord C2 exon
chr7:87235221-87237637
Length
3726 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ACTGTGCCTCTCTCTTATAGACC
3' ss Score
11.62
Exon sequences
Seq C1 exon
GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGTCATATGCACCTGCACGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAG
Seq A exon
GTGGGTGGGCTGTGCGCAGTGGACAGAGCAGGATTGACAGCAGCATGGCGCACTCAGGAGTCTCCTCTCCAATTAGGGGTGTAGGGGGGCTGGCCAAGGCTGAGACGTCAATGAGGTGGGCTCAGGTCTGGAGAGAGGGGGAACCTGGAGAGCCATTGTGGCAGTAACGGGTGGGGGGTATTTATGTCTTCTTCCAAGGACCTACGTGGGCTCACTAAAACAATAATAAAACAATAACTTCTACACGTTGAGTGCTGTGTAACTCATGTGACCCTCCCAGGGAGCCTGGGATTATTCCTATAGTGGAAACCACGGGGCAGAGAGATGAGGCAACTTGATCATAACACATGAGAGCCATCTCTCTCGTCATTATGATGAGGTGCCGTGATAACTGCAAGTAAGTGAGTGGGAAAGTGACAAGGTGGGGGACACAAGGTCACACCTCCGGAGTGCACATGGAGATTCTCAGACACTCAATCAGTCATGGTACCCGCTGGAGAGAATACAGCTACATAGTCAGAGAGGGACAGGTAGTTCTGTCAGCGAGTTTTATGAGAGAAACCTAAAATAAATGATAAATGTAGGAAAAATAATTAAAACAGAACCCAAGATCTAGGAGATCTGGGTACTTCGGCAGTACACACAATTCTAGCCTTTTCCTACCGAGGCAGGAAGACCGTACTTCAAGGCCAGCATGGCTATAGAGTGAGAGAGATCTCCAGAGAGGCAGGTGCAGCTCCACATACCTGGAATGCAAGCCCTTGGGATACAGAGGCAGGATGACAAGTTTGAGGTCAAGCCAGACTGAATAAGACCCTGTCTCTAAAAAAAAGAAAAAAACCTGGAGGATGCAACATCTGGATGACTGTTATGAGACGTCCCCACGTCTGTCTGGTCGCAGCAGAGCTGACCATTCTATTGTGGGGCGGTAGCTTTCAATTGTACGGACAGGAGGCAGCTGAAGGTGCACCTGAGGTTCCTCCCTAAGCTAAGCCTTCAGTGTGTTGGCAGCAGCTAGGTGGGTTGACTAAGCCACTACAGACTGCTAGGGACTTGGATTTGGAGCATCTGGCCAGTAAATGGCCTAGAATTTCTGGCAGAGGTGACATTGTGGCTTGTTCTAGGTAGCCTTTCAATAGTCTTACTATGGCTATGTTGGTAGGTAAGCAAGAACCCTATAGCCTACATCTGGATGTTCTCTGTAGCCCCTTGATACACATTGTCTGGAGTGGACGTGTGGAGTAGGCTTAGCTTTGCCCCAGACCTGCTGCTGAGTGAGAATCCTCATTACCAAAGGCTCTCTGTTCCTTGCCTGATGTATCTCCCTAGAATCTCCTCAGAACTGACATAAACTGCTGGGCTTCCAGCAGTTTCTAGGAGTGGGATGAGGGGATTGCATATCCAACAGGCTCCCCTTTGGATAGCTTTGATATAGGATGACATCTCAAATTGGCTGCCCATGGGAGCCCCTTGAAAATTCTCCCTTAACATTTATATGTATGGGTTTTTTGCTTTCATGTATGTCTGTTTGCCACAGGCTTGCCTAGTGGAGTGGGGGGGGGGGGGCGGCTGTCAGATCCGCTGGGGCTGGGGTTACAGACACAGACACCACGTGGGTGCTGGCAATCATTCCGGGGTCTGTGGGAGAATGCCTGTGCATTAAACACTGAGCCATCTCTGCAGCTCAGTGAAGAATGTTGTTAATACTGATGGCTGGGTCTGAATCCCGGAGGTGCCGGGCTGGGGGTTGGGTTTTGAAGCCCTTTGGACTCTTCGCTAAACATCTGTTGGGGAGCGTCACTACAGTGGACTTGCCTTGCAGCTAGTCGCCAGCAGACACCAAGCCAGCCTAGTCCTTTTGCAAACAAGTGAAGTCATCAAGCCTGGTTCTCTGGGTAAGGGAGCAATCTCTTTCCTCGTTTCCAGGGATGCTTAGCACTGCTGCTAGAGCAGCTGGATGCTCGTATGCCTCTTCTAGTTCAACACAGTCTGCAATTCTATGCGGAGTTCAAGGCCAGCCTGAGGTACTTGCCTGAAGCAATGGGCGTAATGGAGACAAAGTGGGCACACCAAATTTGACCTGTAATAAATAAGCAGCGGTGGTATATGATGGGATGGCAGTAAGAACAGACGGAGAACCACCTAGGCTTGGTTCAGATTCAACAGTTTGGAAGTATTGGAGATAACTCAGTGGGTAGCGCTAGCTTAGCATGCACAAGGTTTGACCCCAGCACCCTATAAATTGGGTGTGGTGGTGCATTTTGGAGGTGTAGACAAGAGTACCAAAAGTTCAAGGTCATCTTTAACTATATAATGAGTTTGAGGATAGCCTGAGCTACATAAAAATCTAGTCAAAAGAGAGAGAAAGCCATGCATGGTGGAGCACATCTTTAATCCCAGCACTGGGGAGGCACAAGCGGGCCAGCCTGGTCTAGTAAGTTCCAGGACAGCCAGGGCTACAACAGAAACCCTGTATCCAAAAAAATAAAATAAAATGAAATGAAATAAAATAAAATAAAATAAAATAAAATAAAATGCGGAGAGAGGGATTGAAAGCCTGGGCCATCTTTAAAGTCAGGTGAATATTATCAGAGTTAGGCTACCTCTGTGAGACCCCCACATGACTGGCATTTTCGTTTGCACTCACGGTATAACAGTAGCCACCAGGACATTGCTTCCTGGCACATCCAGGAAAGGGACCTGTCCTCCTTCTTTAAAATCAATAACGTGCCAGCAAGCATTTTCTTCTGACCCAGTGGTCAGATTTAGGTTCCTAAGCCACTCATTGGCAGAGGAGGGTGATTTTGACCCCCAGGGAATAGATAGATATATGCATAGATATAGATAACTGGGAAGATACTCCTGGCATCAGATGGGAAGAGTGCAGGACCCTGTGATGTCCTGCAGTGGCCTACCACAAAGGATTGTGGCCCCAGATGTTAGTGATGCCAAGGTTGAGACGCCCACCTTGGACCTATCAGGGTGAGCCCTGGGCTAGGTCTGTTTCCCCCAACTACCAAAGTTCTTCAGTGGGCAGGGGCAAAACCCACTCCGTTGGCCAGCCTCAGTCCCTACCAGCCAACCCCCACCCCCACCCCACCCCCCGGGCTACTTGTTCATACCAGTCCATGTCTCTTCAGGGGGCACTCTGCTATGTCACAACAGCAAACTTTATAGTAAGATTCCAATTTGACAGAATTACAAGGTACCTCTCAGACCTCCTCCTGTCTCCAGAGATGCTTTGACAAACCTACCTTGCTTGGCTGAGTTTGTCCTTGGAGAGCCCAGGACCAGGGTAGGGCTGGTTTGGTGCAGTAATGTAGAAAAACTACTCCTGCCGGTGCTCCTGAAGTAGAGCTTTGCAAGTTCACAGGAGCACTTGTGGGATGGCTGGGAGGTTGATCAGCCTTTCGGTGTACACGATGAGGTTGCAGGCAAACATTGGATGAGGTGAGGTCTGGGGAGCACTTGGCATGCAGTGGGTACTACATGAGTCCCATAGCAAAGGGGGAACCAGTGATAGGCATTGCAGGTGACCCAGGAGGGCTTAGTGACCTAGCAGGGACAAGGCCCTTCCTTGTACACCTAGCAGTAGGGTTTGTAACTGCCTGGATACGAAGACGGAGGAAACAGAGGCTGGACTTTAAGGTCCACCCCCGTTCCCCCCTTCTTGCAGGATGCTGGGGATGCCCAGTGGTTAGGCCTAACTGTGCCTCTCTCTTATAG
Seq C2 exon
ACCCCATGATGGAGCTGGCAGGCCCTGACCCCTCTGAACTTGACAACCATCAGGAGATGGAGGACTTCGAGGAAAACGCCTACACCTACAGCAGTGTGGACAGCAGCGCGGAGGCCAGCACCCTCACTGAGCAGGCCATGAAAGAGATGGCCTACTACAATGTGCTATAGCAGGCCGCTGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTACTGCCCACTGCCTGGCCCTCCTCCCCCCCAACCCTCAAATCATTTGCACCACTAGGGATCTTTAGACCAAATGGAGACTCTACTACTGTCCTTGCAGGGAGCTGGCCACAGGCCTAGGCATCCCGGTGAGGGAAAGGTAACCAGGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGGGGGAATGCCAGTGAGGCCTCTTACAGGCACAGACTTAGAGGTCTTCCCCAAGCCACCTCAGGCGCGGAGGCGCTCTCCAGGAAGAGAATGCTTGAGCCAGGCCTTGTCTCTCTTCTGCACCGACTCTGGCCTTTAAGGACATCTGAACCCCTGCACTGGCCGACACTGCCCACCCCCACCCTGGTCAGACCCAAGAACCTCTTCCCTCCCCCTATCACTCAAGAGCCAGGCAGGGCACTCTGCCTTCTACCTCCTGGGCCTCCCCTTGCTCCATGCAGGCATGCATGCGGCCCTAGCCCTGGCCCTGCCTGTCGGAGAGCTGAGGGGAGTCCAGCCTCCAGAGCACCCTCCCAGCTGGCCTGCAGAGCTCCCCTGCCCCAGCCTCGTTTGAAAGAATGTCCCTAATGTGCATTTCAACACAGTTCATCCAGGTCTGTTCCAAGCTAAGGTACCAACCACAGGGTCCTCACCAAACAAACCCAGGACATGCCCTGCATCTGGCAAGCATTAACAAAGATAGATGGCGGCTCCTTGAGCCAGCGGGGAGGGAGGGTCGGGGTGACATCTCTGGGACCAAGAGTGGCTGTCCTCAGGGGAAGCCAAGGAAGACCACCCGTGGGAAGAGGGGAACTAGAATGGTTTTGGTTTTGGTTTTTTATGAGCAAGCAGGTGTCGTGGGGAGTGGGTGAGCTGTGGCTCAGCCGGCTCCGGAGGAAGAGCAACATGTTTAACTGAAGACCAGAGAGAGGGAGGGGAAAATTCTGTTTGCAGCAAGAAGGGTATTGTGAAAGAAATTTATGTTTTCCTTTCCAACTCTCCTGTCTATCATCTTTGATGGAGAGGGGTTTTTTTTGGTTTCTGTTTCTATTGGTTTGTTTTGGGTTTTTTTTTTTTTTTTTGGTTTTTGGTTCGTCCAAGCCTCAGCTTTCTTGTGTGCTGTGTGTACTTCCTGCCTCCCTTTCCGAAAGCAGCCATGCCTGAGGGGCCCTGGCCCAGGTGTATCACTAGCTGGGAGCCTCAGAAGGCTAAGGCAGGAGGGAAGTGGGGGAGGCAGAGAACCTACCCGGCCCTCTCCAGTCAGCTGGCCCTCTTCACCTGTCCCCTCCCCTCCCCCCTGTCCTCCATCCATAAGCTCGCAAGCACCCAAACCCCTGCCCACAAATCCCAAGGCCCCCAAGGGGAGGAGCAGGCGGGACTAACCCCAAAAAGGCATAGATGAAGCCACCAGCTTTGGCTGAAAAACCAAGAGGGGGAGACCAGCTGAGGCAGAGGGTGTTGATTCGCAGTGTGACAGCCCCCAAGCCAGGCCTCAGGGTGACTGTTCAGGACTGGGGATGAGGGGGACACAGTGGCCCAGGTGTGGTTTCCCATGGCTCCCGGCCTCCCAGGTGCCCATCATGATGACCCTCAGGTGGCAGTGATTAGCTATCACTGTACAAGACATTTATTTCTCCTGCTGAGCAGAAGGCATCACCCCTGCAAACTACCTCTTCCCACAATGACTTTCTCCCTGGTACCAAAAAGCACCCTGTACCTCCTCCTTCTTCTCTTCCTCCTCCTCCTCTCCTGCCAACGCAGTGGCCTTGGTCTTGGAACAGAAGGGAGAAGTCTGGCCTGGGTGGGGTCTCCCACTGTCCCCCAGCCTGCCATTGGCACAACCCCCTTGGGGATGCCATACTGAAAAAGCCCCTGCCCTCGCCTTGTGCCGGGCAAAGCGGAGAGGAAGGCACAGCACAGTACACAGTTGGAGCTGGAGGTGGTCCTGGCACAGCTCCAGCCTCACCCCTCCCAGGCTTCTGAAAAGGGTGACTCAGAAGCCCTGGCCGAATTCCACTCTAACTTATTTTGACATGTATACAAACCAACTGTTTAGAGATTCCTCTTGTGCAGAGCCCTACTGTGTTTTTATGTTCCTGTTTAAAAAGAGAAGTTTACTTAGCAATAATTATAAATAAATGAATATTCTTTAGCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048897-Zfp710:NM_175433:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):

C1:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF069576=COPI_C=FE(50.9=100),PF0009621=zf-C2H2=WD(100=40.7)
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types