GgaINT0061257 @ galGal3
Intron Retention
Gene
ENSGALG00000015008 | ZNF366
Description
NA
Coordinates
chrZ:26080080-26083230:+
Coord C1 exon
chrZ:26080080-26080254
Coord A exon
chrZ:26080255-26082694
Coord C2 exon
chrZ:26082695-26083230
Length
2440 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
CCCCCTTGAAACACTGCAAGGTT
3' ss Score
1.31
Exon sequences
Seq C1 exon
CTGTGTGGAAAGGAGTTTAACCGAATGCACAATTTAATGGGACATATGCACTTACATTCAGACAGTAAGCCCTTCAAGTGCCTCTACTGTCCCAGCAAATTCACCTTGAAGGGGAACCTCACCAGGCATATGAAAGTCAAACACGGGGTCATGGAAAGAGGATTTCATTCTCAAG
Seq A exon
GTAATATTTATTAGCAAAGTTATTCTCTGAGAGGTTTGGACATGCATATCAGTAATCTTACATGGGTCTTTCCTACAGACCTACAATCTTATATCATAGATCCAATGCTACTGTAAGAGATTGAATCCCATAAGCCTGCGAGTTTGTTATTAACTATATATGTTACTTCTGTGCTACAGATCAGAGCTGCCCAAGACAGCAGCTCTGTTCTCTAAGAAGATTTTGATGACATAGAGGTACAGACTGAGATGGAGTAGTAGTTGGAAAGCAAATCAGATGGTAATGACAAGAAATTCATTTTGGCACACTAAGTTGCCATTTTCAGATGACAGGGAGAATGCAATCAGTAGTGCTAAAGCAAAGGATTTATCAAGTCATAGCAAATGTTCTTGTACTTAAGCTCACAAGCTCCGTCACTGCAGGAACAGGGCAATATCAACAGCCCTGCAAAGCTGCTCCTAGTATGTGGGTATCCCTGACACACAAACGATGGTGAGCAGGTGTGCACTCAGTTTTAAGAGACTTTAGCACACACAGCTGGTCAGGACATGGATGAAATTGCATTGATCTTCCTAATGGAGGGTGTAATTACACTATTTCTGAATAAATTTTACAGTTTTGGGGGTATTTGACAGACCATGGCCTAGCAGCCATGAGCAAGCAATCATTTTGCCCCACGCTCATCTAGTTTGCATTTGAGGTATGTCTGCATGGTTTTAAACATGGAGATGAATAATAAATCCACTCAAAGCTGGCAGAAGCAAAATAATCTGGAAATTTTCATAGGTCTTGCTCGTTGCTTATTGGATTCCTGGCTAGAACGGGAATGGAAGCCCATGTCGCTCTACATCTAGGAGCCTTTCAACTCAAGATGCATTTGTTCTGTGCTATACTGATGAATCTGATCCTAAACAAAAGCCACCAGCTCAAGCTCACATTACAGAGACACATGAATGAGAGAGGACAATCCTCCCTTATTTCAAAGTATATGGAGCTCTGACCACTCAGGCAGTATTTTCTACCATATACACACACATTTCCTAAAATCAGCCTTATGTGCACAAATGACAATGCTATCTGAAGAACTGATGGAATTAGGGAGGATCGTTTGGAGAATTTCGGTATTAAAGATGTTTTGTTTGTTTAGAGTTTCTGGATAAATAATTCTATCACGGGTAATATTTCACAGTGTTCCTCAAATTCGGGCTTTAATGCAACCTAACACATGCGGGAAACACATCTTCTAATGATATTTGGCATAAAACGTTCAAAGATTCTAACTAGTAATGGGATAAATGGCTCTCTTTTTTCCCTTTAGTCTCCTACAGCCCTGTGCGAGTTACACAATTACTTGTAATTGAAGACAGCCTAAGTGCTTTTCAGTGTACAGAGATTCTTCAGCCCTGGAGGCTTATCAGACAGGAGACAATTTGTAAGGGCTGCCACCTGCTCATGAACCATTTTAATGAACACAACACAGTTGCAAAGCAGCAGCTGCATCTAGCATGGCTGCATAAATCCCACAGACACCGGATCAAATTACTAAAGAGGAAAAAAAATCCAAGCAAATAAAACAGCTTCTATCATAGATTTTTTGCTGCTGAGTGAAATGCTCATCCCAGTAGTGTCACCTTTGTTTAAATTAAGATGGACTATGCCTGTAATATCTGAATTTTCCTCTGTGAATCCTGATGGTCAGAGCACATTTTGAGTCCGCTGTTGCCTCCTGGGCAACGTCTGGGTTTCCAACAGAGAGGAGACACTCTGACAAATATTAAGACAAAGCAGAACAAGGACCACACTCAGACTTACACTTTGCAGCTCAAAATCATCATTTGATTATGATGATTTCCTCAAGCTGAAGGACATAGAACATTTCAGTGACATTGGATAAGAATGGAGAAGTCAATGAGAGATGACGTTGTAGACTGATGGAACAGGATTGTATTTTCCCTTTATAGTAATATCTTTGAACGGGAGTGTCTGCAGAACAATCACATTAAAACATTTTAAATCTCTTCCACTCTTCTGGAAAAAAAAAAAGCAAAAACTGAAACTTTGATTATGGCATGTGATGGTTTAGATCAAAGCCTTCACTAAAAAAATAGGAAGAAGGAAGTGGGTAGGTTCACTGGCAAAAAATAGTTTACAAGAGGCCAGACACTTCACTTTTATTCCTAGCGCTCTCTCAAATGTCTGGCATGTACAGCAAAATGTTATGTGTGTCCTGACCTGGCTGCAAGGTAAATACAATAGTACTTCTTTTAACAGTATCTCAAAGGAGATGTAAATATTAAAGGACTCAGAGATAGCTGAATGGAAGACAAAGGTAAAGCATTAAACAAAGGCCATCTAAGGCTTTATGTTTTAACCATGTACTGTATAGAAGCATTTGCTGTATGTAAATTGTTCCTTTTCTCCCCCCTTGAAACACTGCAAG
Seq C2 exon
GTTTTGGAAGAGGGAGAATTGCTCTGTCCCAGACAAATGTGTTGAGAAGCTTGGAACAGGAAGAGCCCTTTGATCTTTCCCAGAAAAGCCAAGGGAAGGGGATCTCATTTCATTCGGATGGCGAGAGTGCCAAGGGAAGCTCATGCCAAGAAGAAGAAGAAGACAACTGCTATGAGGCAGAGCAGTACAGCCCTGGTGTGTACCATCATGACAGCAACAAGTTGTACGTTCCTCAAGATCTGTCTGGCAAACCACAGTGCATGATGAAGGGCTTCAGAGAGTCTTACTGCAGTGAGAAGGAAGAAATATTAAGTGAGGAAGGACTGGAGAAGAGAGTAGGAGATTCCAACAACCAGGAGAGCCCAGGAGAGAGAGACCTTGCAAACGACAAGGAGCACCTGAGCTTTAGAGCCTTTGAAAAAGCCAGTCTGGGGCACTCTCTCTCTGATTACTTGTATTTCAAGCACAGGAGCAAGAGTCTGAAAGAATTACTGGAAAGAAAAATGGAAAAACAGACAATGCTTATAGGCATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015008:ENSGALT00000024201:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.410
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]