HsaINT0187036 @ hg19
Intron Retention
Gene
ENSG00000178175 | ZNF366
Description
zinc finger protein 366 [Source:HGNC Symbol;Acc:18316]
Coordinates
chr5:71739234-71743244:-
Coord C1 exon
chr5:71743070-71743244
Coord A exon
chr5:71740119-71743069
Coord C2 exon
chr5:71739234-71740118
Length
2951 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
TTCTTACTCTGCTCTTGCAGGTC
3' ss Score
11.24
Exon sequences
Seq C1 exon
CTTTGTGGGAAGGAATTCAACCGGATGCACAACCTGATGGGCCACATGCACCTGCACTCAGACAGCAAACCCTTCAAGTGCCTCTATTGCCCAAGCAAATTCACCCTGAAGGGGAACCTGACACGCCACATGAAAGTCAAGCATGGAGTCATGGAGCGGGGCCTTCATTCCCAAG
Seq A exon
GTAATCACTCTTCTGGGAAGCCCTGCAAGTCAGTCCAGTGGACAACAAATGGGAGCTGAATTCGTTTTATGGGGCATTACCTTGAGGGTTATTCTTGTCAAGACCACAGCAGAGTAGCAAGAGTAACCTTATAATGTTACTAGAAAAAATCTGATGCTAATTTCTGACATAGTAAGTACAAGTGAATTAGAGTAAATTGGACTATCATCATGATGCCAGTCGGTACCATTATTTGTTCCTTTGTTCCAGACACTACATCAGGTGGCTTGTCGCTAATATTCATGGCAACTCCAAGCTGGAAGAACTTCTATTATTTCTATTTTACAGCGGGGGAATGAAGGCTTCAAGAGATCAATTTGCCCAAAGTTGCTCTGCTGAAAAGTGGCAGAGTCAAGATTTGAACCTAGGCCTTTCTGACTGTGCAGCCTTTATTGTATCCTCTTCATGACTTTGCTGTGAATGGGCACGCAATTTTTCTTTCCTTTTTAGAAAACAGATGTGCAAGCCTTACTGTTAGCAGAAGTATGTTGGTAGCAGGCTAGGTCTTTCCTACTTGTTCACAATCAGACACACCCAAGGACAATTTTCCTGCTTGGTAGGTAGGGCTGATTGGCCCATATGCAGAGCAGGGGTTTACACCTCCCCCACTGAATCCTCACTGAACTAATGAAAAGTTCTCACTGCCTTTACCTTCTCAGTCCCAGAGCCCTTGGCAGTGAAGAGTTTATGTTCCAGATCTACTCAATTCAGCAGGGTTGCTCCTTAATCGTCTAATCAACCAGCCCTTCAATAAACAGGCAATAAATGCACTTGTGTCCAAAGCAGTGAACTACACGCAGCGGCAGATACTAGGGGAAGGAGACCATCTGCCCTCTAGGATGTCTGTGTTTGCAAAATCATATTAACAGCTTTTCGGTCACTAGTATGATCAAAGCACAGGGTGAGACACCTTAGGGACATTATTGCTTGGCCCTACAATGCCGTGAAAGAGACTGTGTTATTCTCATTTTATATAAGAGGAGACCAAGGCCTAGAGGTGTTAGATAAACTGCTCAAGGTCAAACAGCAAGTCTGAAGACAGAACTGGGATTCCAGCCCAATTTCTGAATCAAGCCAGTGCTCACTACCCTAGGCAGAAACATGGGGTGATTTGTTTATGTGCTGTTTCACTCACCTCCTTACAAAAGAGATGGTGGAGTGGACAAGCATATTCATAAACAGATAGACATATGCACACACAGTGTGAAACAAAATGATTGTAGCTTTCAGGTTTTTTACAGTACCCGCTGAGTTTCTAGTGACTCCTGGATAACAGGGAGCTGTGGTCACAAAAAAAGGGCTGGAGTTTGTGCAAAAGCCCTGAAAAAAATTGTAGTTAAAACAAAAACAATTTTATTTTTCCTGCAAAAGTTTTTCCCCTGAATTATTCACTGAATCTCTAGTTGCCTGAGCCACTTCCCCAAGCTAGACCTGGATTTTTCCGGAAGCGGTGAGGTTTGCTCTGTCATCAGGACGGGAGACATACAAGTCAGTGAGGAGACCACACTCCAACTGAAAGCATGACCTGGTCGCCATGATTTACCCCACACTGCTGCTCAAATCCTAAAAGACACCTAACAGCTCTGTTGTTCTGGAAAAATAACTATCAGAGGGTTGCTTTGAAAAATTTTAACAGACTTTCAACAATCTCAGTGTTTTCATCTACAAAGGGTATTAGCTTTTATTTTTCACTCTAGCTTTTGAAATGGCTCAAAAATCATTAAAAAGATCTTTCCTGTCCCCTGACAGGATTAAAGATACAGACAGCTTCATTGCCTGACAGCATCAAAAAGTGAACAAAATTGGACATCATCGCCCCTACCCTTCTTTTTTCACCCCCTCCCAGAAGCCTGGTCTGGCTGCACCCCAGGACCCCTCCCTTCCTGTTGCTCCTCCTCAGTGTCCCGCCCATCCCTGGAGGCCTGACTATTGGCTCATCAAAGGTCAAAGCCTTAAAGACAGGATCAAATGAAACTGCCATGCTGAAAAGCCCATCCCTACAGCCCTGCAAACTGAAGGCAAAAGTGAGGCCTCCTTGAATCACTGTGCCCAACAGCAGGGACACTGGAGGTCAGACACAGGGGCTGTGTGAGCTCCTCAGAGGACCTCTTCATGCCATCTCTACCCTGTCTATGAGTAGGCTGTTGGCAAAGGGGCCACAGTCAGGGGTGGTGTCTGCTGCCCCAAATAGGTTCTCTTTGTTTTGTTCAAGATGAAAATGGCTTTATTATTGATTTACTTTTGTTTATGATAAAACATATGCTCATGGTAAAAAATAAAACAATAATACATTAAAAGTGAAAAGAGAGTGTTCATTAATTTAAGATTTTGACATCCCTCCTTCCAAATATTTTTTAATAGAAATGGCTAGCTAGATAAAATCAGGTCTGCACTATAAATAAATACACACACACATACTTACATATATTTTTGTTTTTACTTAAAATACATAGCAAATATCTTTTTGTGATCATTAGTAGGTCTCTACATCCCCTATGCATAATTTGCTATATGGATATATCATTATTTATTTAACCAAACTCCTATTATTAAATACAAAGTTTTTTCATTGTTTGACTGTGATAAAAAAAAAATATGGTGATATGCATCCACACAGTGTTTTGTGCACCTGCCTGCCTATTTTTTCAGTTTAAATTCTCAGTAGCATAATTGCTAAGTCAAAGCTTATTTTTAAAGCTTTTGGTGCATGTTGCCAAATTCACCTTAAAGGGATTAAACCGATTTGGACACTGTCTGTTACAAGCCTCCCAAGACCACATCCTTACTGGGAATGATCTATTTTTAAAATACGCATCGGAATACATTAAACGGCCCCGGGCTGCTCCCCTTCCTCAAGGTCCCATTTCCACAGCATTTCCTCAGGTGCATGAATTCTTACTCTGCTCTTGCAG
Seq C2 exon
GTCTGGGAAGGGGGAGAATCGCCCTGGCACAGACAGCCGGTGTCCTGAGGAGTCTGGAGCAGGAGGAGCCCTTTGACCTCTCTCAGAAGCGCCGGGCCAAGGTGCCGGTGTTCCAGTCAGACGGGGAGAGTGCCCAGGGCAGCCACTGCCACGAGGAGGAAGAGGAGGATAACTGCTACGAGGTGGAGCCCTACAGCCCTGGCCTGGCCCCCCAGAGCCAGCAGCTCTGCACACCCGAGGATCTGTCCACCAAGTCGGAGCACGCCCCCGAGGTGCTGGAGGAAGCCTGCAAGGAGGAGAAGGAGGATGCATCCAAGGGAGAATGGGAGAAGAGGAGCAAGGGTGACCTTGGGGCAGAGGGCGGCCAGGAGAGAGACTGTGCCGGCAGAGATGAGTGTCTCAGTCTCAGGGCTTTTCAGAGTACCCGGCGGGGCCCCTCTTTTTCTGATTACTTATACTTCAAGCACAGAGATGAGAGTTTGAAAGAATTACTGGAGAGGAAAATGGAAAAACAAGCAGTGCTTTTAGGTATCTAAGTGGACAGTTTTAAAATTACATTTGGAAAATGAGAAGGAGGCAGTTCAAATATAGCTTTCTGCATGAACTGTCATTTTCTGGAGACTGGCGAATAGTACCAATCTCTACAAATGGCTTAGACTAAATGAGCAGGGATGTAGGTAATGGAAAGCCTTCTCAGGTCATTCACGGGGCCCTTGATACCCTTCACACATGTGCAGGGTCTTCATCAGTGGCGTTTTATGCATTGCCAGTATAATAAACTGTGAGTATTCTTCCAGATATCTAATTGTAAGCTGATGCTGAGGTGCTTTTAGAAATTCTACTTTCCTTTGATTCATATGCAATACATGGTAAATTTCTAATTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178175-ZNF366:NM_152625:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=NA C2=0.556
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)