MmuINT0179097 @ mm10
Intron Retention
Gene
ENSMUSG00000050919 | Zfp366
Description
zinc finger protein 366 [Source:MGI Symbol;Acc:MGI:2178429]
Coordinates
chr13:99243914-99247037:+
Coord C1 exon
chr13:99243914-99244088
Coord A exon
chr13:99244089-99246020
Coord C2 exon
chr13:99246021-99247037
Length
1932 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
ATTCTGCTCTGGTCCTGCAGGTC
3' ss Score
10.33
Exon sequences
Seq C1 exon
CTGTGTGGGAAGGAATTCAACAGAATGCACAACCTGATGGGGCACCTGCACCTGCACTCGGACAGCAAGCCCTTCAAGTGTCTCTACTGCCCCAGTAAGTTCACGCTGAAGGGGAACCTGACCCGCCACATGAAGGTCAAGCACGGAGTGATGGAGCGAGGCCTGCACTCTCAAG
Seq A exon
GTACTACCTCCAGTGTGGTGGGAAGCCCTGCCTGCCATACCCAGGGGACAGCACATGGAAGAGCAGCGTGCTTTTATGGGGGCACTTCTCAGGGTGGGGTGGGGTTATTCTTGCCCATCGAAGGGGGTGTATTTTAGTGACCACAGCAGAGCAGGCAAGAGTAAACTCGAGCCACTGAGCAACTCTGGAACACAATTATGATGCCAGCGGTACAGGCCATGACGTCTTCGTCTTGGGCAGTACACTGTGTGCTTTATCTCTTTACATCCCCAGTCACTCCCAGCTAGAGAACATCTATTGTTTCTATCTTGCAGGTTGGAAATCTGAGACTTCCAAAGTTGCTCAATGAAAAAGAGAAAGGAAAAAAAAAAGTAGATTTAGAATTCGAACCCAGGCCTTTTCAACTCAGTCTTTGTTATATCCTTACTGTATGACGACTTTATTGTAGATAGTCATTATTATATTATTACATACACTTCTCACATAGCTAGTGGAGGTGGGGGTTTTCTTCCATTTTCAAAATCAAGTGATGGATCTGCACCCCATGCACTGGCAGAGATGTATTTGCAGTGGGCAAGGTTTCTGTTCACACAAGCGTGGCTTCCCTGTTGCCCCAGCTCCCATGTGAGCAGGGGTTTGTGTCTCGACTGAACTAATGAAAACCTCTTGCTTATTTAATCTCCTTAGCTACAGGCCCGTGTCAGTGAAGACTTTATGTCCCAGGTCCCCTGAGTGCCGCAGGCTACTTAGTCACCTCATCAGCTAGCCCTACAAAACAAAACAAAATAAAACAAATAAACACCCCCCAAAAAATCATTAGAAAGATGAAAAAGATTCCTTTTGGCCCTGGACAAGATTAAAGCTCTGGACAGCAGGCATCTTTGTCCCTCAGAGCCCCAACCCTTCCTTTCTTCTCTCCCACCACAGCCTGCCACCTGCTGTGTCCTGGACTCCTCCCTTCCTGTTTCTCAAACCCTCCATGTCCCTGCTGGGTCTGACAGTCTGGTTTGGGTCACCACAGGCAGAGAGGCCTTGAACTCAAGATGAAATGAGCAGCGGTCTGTGCCCAGGGCTAATCCCTAAGCCCATGTTTCTGGACCCAAGCAAAAGGGAGTCCCTGCCCCAGATCACCCAGCCCATTGCAGGGATGTCAGGTCAGGATCAGGGTCAGGGATTCTGTGAGCGCCTCGGAGAACCTCTACTCTGTGCATAGGGACCACAGGCTGCGGAGTTTTGTGGCTTAGTTTTTCTCTGAATTGTCTTTGCTGCGGCTTTATCCATCTGAGGTCTTGAGACCTCAATATTTATTGAGGACTAAATGTTCTCTGTGAAAAGAAAAATGAGAAATACTTGAGGAGTGAGGAGAAAGTGCAGTAGTCAATTCAGAGTTCATCAATTTTGAATTCTGAGCCTACATCCTTCTGGACAGTTTTGATAAGGAAATATAAAAGGGAAGAAATGACATAAGGAAGTAGGGGAGGGAGGGAGAGGGAAAGAGAGAGAGAGAGAGAAAGAGAGAGATTTTAACTTAGAATTCACAGAGAATACGTGTATGTATTCTCAGGTAGTACACATTTTGTTCATTGTGTAGTTCCATGTATGTGTTTAAACCACACTTTAGATACTATTTTTCATTTTTAGAATAATAAAAAATATTTCACACGTACTCTGTGTTCCCGCAGCTCTCCTTACTTTTTCATATTTTAAATTCTCAGGAGAGACATGCTAAGTTAGGACACACCGTGCCAGGTCTGCCTTAACGAGTTCTATGAATAACAAGCTTCCCATGGCCGAGTCCTTAGTGGGAGCTCTTCCCCCCTCCCACACATCACCCCAGCCCACCCTCATTTTTAAAATGACCAATCAGAATGCCTAAAGGGCCTGGGGCATGACTTTTTTTTCAGACACATAAATTCTGCTCTGGTCCTGCAG
Seq C2 exon
GTCTGGGTAGGGGACGACTCGTCCTGGTGCAGTCCGCTGGTGTCCTGAGGAATCTAGAGCAGGAGGAACCATTTGACCTCTCCCAGAAGCGCAGTGCGAACGGGCCAATGTTCCAGTCCGACGTGGACAGCACGCAGGACTGCCTCTGCCAGGAGGAGGAGGAGGAGGCCGGGGAAGAGGACAACTGCTACGAAGTGGAGCCCTATAGCCCCAGTCTGGCCCCGGAGAGCCAGCAGCTCTGCGCGCCTGAGGATCTGTCCACCAAGCAGGAGCAGACCCTGCAGGACCCTGGAGAAGGATGCAGGGATCAGGATGCTCCGGAAGAGCAGCAGGAGGACAGGAGCGAGGACCACGAGGGCAGTGACATAGACTGCGAGGGCAAAGACATAGACTGTGCCATCAGAGAGGAGCGCTTGAGCAGCCGGCTGTTGCAAAGCGGCGGACAGGGCCCCTCGTTTTCTGATTACTTATACTTCAAGCACAGAGATGAGGGCTTAAAAGAATTGCTAGAGAGGAAAATGGAAAAACAAGCAGTCCTTTTGGGTATCTAAGTGAACGGCTTTAAAATTACATTTGAAAAAGGAGATCTAGGCAGTTCAACTATAGCTTTCCGTAAGAACTGTCATTTGAAGCAAACGAGAGAGTGGCGCCAATCTTTACAAATGACTCAGACTAAATGCGTGGGTAACATCGGCATCTCAGGTCCTTTCTTGGGCACTCGGCAATTTCATACACGTGCAGGAGCCCTTTGGTGTTATCTTACACATCACCCACATGATGAACTGTGCATTCTTCTAGATATCTAACTGCAAGCTGAACCTCAAGGTGCTTTTAGACTGCTTTCTTCTAACACACAGTGATGCAAAAGTCTTTCTAGTTGCAAGAGTGTGGTGCTCCTGTTATCTTAATTAGTGACTATTTAGTTGCATTTATGAAGGTTACAGTATCATAGGTGAAAATATTAGTAGCTGTATATATAAAAATATAGCTTCTATTAAATAATAGAAACACAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050919:ENSMUST00000056558:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=NA C2=0.596
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTCACGCTGAAGGGGAAC
R:
TGCTTGGTGGACAGATCCTCA
Band lengths:
347-2279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types