BtaINT0165382 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020601 | ZNF366
Description
zinc finger protein 366 [Source:HGNC Symbol;Acc:HGNC:18316]
Coordinates
chr20:9090738-9094324:+
Coord C1 exon
chr20:9090738-9090912
Coord A exon
chr20:9090913-9093800
Coord C2 exon
chr20:9093801-9094324
Length
2888 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
TGTGCCTTTGCTCCTGGCAGGTT
3' ss Score
10.1
Exon sequences
Seq C1 exon
CTTTGTGGGAAGGAATTCAACCGGATGCACAACCTCATGGGCCACATGCACCTGCACTCCGACAGCAAGCCCTTCAAGTGCCTCTACTGCCCCAGCAAGTTCACCCTGAAGGGGAACCTGACTCGCCACATGAAAGTGAAGCACGGGGTCATGGAGCGCGGCCTCCACTCTCAAG
Seq A exon
GTAATCGCCCTTCCAGGAGCCCTGCGGTGGCCGGGCCCAGCAAGTGACGGAATGGGAGCTGAGCTTGTCTTTAGGGAGCTCTACTCCGGGGGTTATTCCTACATTTAAAAAAGGGAGCATCGTCTTCAAGACCACAGCAGAGTAGCAGGAGCAGGTTGGCAACATAACTATAGCAAACACAGTGAATATCTGGAGGTTGTAAGTGAAAGTGATGTTGGTTAGAGCATCATAATGGTGCCAGTCGGCACCATTCTTCATTCTGTGTTCCAGGCCCTGCAGCGAGTGCTCTGTCTCTGTGAATATTTATAGTAACTCCAGGCTGGAGGAACTTCTATTATCCCCATATTACAGATGGGGAAGCTGAGGCTTTGAAATATTAACCTGACTCAACTGAAAAGTGGCTGACTGAGAATTTGAACGCAGACCTTTCTGACTCTAAAGCCACACTGTATCCTCTTGATCGCACTGCTGTTACGGGGCAGGCCTGCAAGCTCTGTTACGGGGCAGGCCTGCAAGCTCTGCTGGCAGCTGAAGTGTGTCTGGTCTAGGTGTAGGTCTGGCAGGATAGCAGGCTAGGTCTCATCTGCCTGCTCACAATCAGAAACTCACAAGGACAGTTTTCCTGCTTGGAAGGGCCGGTTGGCCACAGGCCAAGCAGGGGCTTCTATCTCCCCCACCGAGTCCTAACTGAACTGATGGAAAGTTCTGCCTCCTGTTATCTTCTCAGTCCCTTTCTTTGCAGGAAAGAGTTAATTTCCAGAAGTACTGAACTCAGTAGGTTGTCCTTCAGTAAACGGGCAGTAAATGCTCTCTGTCCAGTGTGGTGTGCTCCATGCCCTGGCAGACGCAAGGGGAACTGAATCGCCTTGGTTTGCCCTCTGGGAGGTCTGTGTGCGGGGAGAGAAGACACACATATATGTAACTTGCAGTAGCTCGTTAACTGGGCTGATGATCCAAGCACAGGGCAATGCTCTTAGATGTTATTGCTTGTCCCCAGTATTTCACAAAGTAGACTGTGTTGTTCTCATTTTATGTAAGAGGAGACCATGGTCAAGAGGTGTTATAGAAACTGCTCAAGGTCAAACAGCAAGTTGAATGCAGAATTGAGATTCTAACTCAGGACTTTCTGGCTCAAGCCAGTGCTCACTGCACTGGGTAAAAACACGGGTGGTTTGTTCATATTTGCTGCTTCTCCCCCCTCTACAAAAGATGTGGTCAACTAGGCACCCGTATTCATAAGTAGAATGCATGCATGCATACCCAGCAGGAAGCAAAACGATTGTAGCTTTCAGATTTCTGAAACGCCCTCTGAGTTTATGATGACTCCTGGGTGACAGAAAATTGATCATCCTAAAACAAGGCGTGGAGTTTGTATAAAAGCCCTGAAAAAATGCTTGTTAAAAACAAAAGCATTTTTTCCCCTTGAGGATGTTCTTTTCCTGAATTATTCTTTGCATCCAGCTATTCTGGATTTTTCCAGAATTAGGTGAAGTTTGCTCAGCCACCACGGCTGGAGACATAGAAGGCAATGAGGAGACAGTGCTCCATCTGACAGTCTGACTCGGTCACCAGAACTTACTCCATGTGGATGCTCACGTCCTAACAGGCACCTAAAGACTGTCATTCTTCTGGAAAAATCAAGAGCATCACTGTATTATCAGAGAGTTGCTTTGAAAGTTTGTAACAGACTTCCGACAATGTTAATGCTTTCATCTACAAAAGGCTTTGGCATTTCTTCACTCTAGTTTTTGAAATAGCTCAAGAATCATGACCCAGATTAAAAAGATCCTCCCTGTGTCCCTGACAAGAATAAAGCTACAGATAGCTTCATCGCCTGACAACACCGTAAAGTAGGCAGCCCTGGACATCGGCTTCCTCGGTGTGTCCCCAGCTGCTTCTCCCTGGGCACCAGGGTCTGGCCACCCCCTGGCCCTCCCTGCCCTCCTCCTCCTCAGTCATCCCCACCTGTCCTCCAGGCCTGACCACTGGCCCCCCACGGACGGGGCGGGTCGCGCCTCCCACTTGTCTGTTGCCTCCTGAAAAGCCCATCCCTGAAAGTGAGGCCCGCCCACCTCCCCGTGTCCAGCAGCGAGGACACTTGTGGTTGGGCAGGGGGCTTCGAACGTCTCACCGGACCTTCCTCTGCCCTGCCAGCTCTGTCCGTGCTTGGGGAGCCCTGGACCCAAATGCAATATCTGGTTTTTTCCCACAATGAAAATATCTTTGTTATTTTTTTCTTATGGTAAAATATGTGTTCACTGTTAAAAGTAAAAAGAAATATATTCGAAGTGAAAAGAAAAATGTAAAAATCACCTCATAGTTACCCATTTTTGAGATTTTGACATATATCCTTCCAGATATTTTTTGATAGATAAACTAGAGGCTACACTATAAGTATATACATTTTTACTTAAAGTATATAGAGAATACCTTTTATGAGCACTAAGAGGTATCGACATATTATACACATAGAAGTACCTTCTATACACATAATACCTTGACTGTTCTTTATGGTCTGAGCCACCAGGGAAGCCCCATGGAGGTACTACTATTTATGTAAGCAAACCTCTGTCCTTAGATGGATACGTTGTTTTCACCCATCCTTATACAGTTTGTGCATCTGCCAGACTATTTTCATAGTTTAAGTTTTCAGTTGTGTGATTGGCTAAGTCAAAGGTGTGCTTATTTTTAAAGTTTTTCATGCATGTTGCCACAATCCCCTGAAAGGAGTCACACGGATATAGATTCCAGCTGTGACAAGGCCCATCTCTCTACAGCCTTCTGGGGATTTATCTAGTTTTAAAATGCAAAATCAAGCTATGCTAACCAGCCCTGGGTTCCACCCAGCGACCCCTTCGGCGGCCTGAATGTGCCTTTGCTCCTGGCAG
Seq C2 exon
GTTTTGGAAGGGGGAGAATTGCGCTGGCGCCGACGGCGGGGGCCCTGCGGAGCCTGGAGCAGGAGGAGCCCTTCGACCTGTCCCAGAAGCGCCGGGCCAAGGGGCCAGCCTTCCAGTCGGACGGGGAGAGCGCCCGGGGCAGCTCCTGCCACGAGGAGGAGGACGAGGACAACTGCTACGAGGTGGAGCCGGACAGCCCGGGCCTCGGGCCCCGCGGCCCGCCGCTCTGCGCGCCGCGGGACCTGTCTGCCAAGCCGGAGCCGGGCCCCGGGGAGGAGGCGCCCGCCGAGGAGGCCTCGCCTCCGGGGGCCCGCCCGCTGAAGAGCCGCGACAGCCTGGGGCCTGAGGGCGGCCCCGAGCGAGAGTTCGCCCGCAGAGACGAGCGGCCTGGCCTCCGGGTCCTGCCGAGCACCCGGAGGGGCCCAGCCTTTTCTGATTACTTGTACTTCAAGCACAGAGATGAGAGTTTAAAAGAATTACTGGAGAGGAAAATGGAAAAACAAGCAGTGCTTTTGGGGATCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020601:ENSBTAT00000027448:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.805
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]