MmuEX0053576 @ mm10
Exon Skipping
Gene
ENSMUSG00000048897 | Zfp710
Description
zinc finger protein 710 [Source:MGI Symbol;Acc:MGI:1921747]
Coordinates
chr7:80086434-80094173:+
Coord C1 exon
chr7:80086434-80086608
Coord A exon
chr7:80088535-80088632
Coord C2 exon
chr7:80090335-80094173
Length
98 bp
Sequences
Splice sites
3' ss Seq
ATCTCTTTCCTCGTTTCCAGGGA
3' ss Score
11.74
5' ss Seq
GAGGTACTT
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGTCATATGCACCTGCACGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAG
Seq A exon
GGATGCTTAGCACTGCTGCTAGAGCAGCTGGATGCTCGTATGCCTCTTCTAGTTCAACACAGTCTGCAATTCTATGCGGAGTTCAAGGCCAGCCTGAG
Seq C2 exon
ACCCCATGATGGAGCTGGCAGGCCCTGACCCCTCTGAACTTGACAACCATCAGGAGATGGAGGACTTCGAGGAAAACGCCTACACCTACAGCAGTGTGGACAGCAGCGCGGAGGCCAGCACCCTCACTGAGCAGGCCATGAAAGAGATGGCCTACTACAATGTGCTATAGCAGGCCGCTGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTACTGCCCACTGCCTGGCCCTCCTCCCCCCCAACCCTCAAATCATTTGCACCACTAGGGATCTTTAGACCAAATGGAGACTCTACTACTGTCCTTGCAGGGAGCTGGCCACAGGCCTAGGCATCCCGGTGAGGGAAAGGTAACCAGGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGGGGGAATGCCAGTGAGGCCTCTTACAGGCACAGACTTAGAGGTCTTCCCCAAGCCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048897_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.356
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAGCAAGTTCAACCTCA
R:
GGCGTTTTCCTCGAAGTCCTC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types