RnoEX0101676 @ rn6
Exon Skipping
Gene
ENSRNOG00000014278 | Zfp710
Description
zinc finger protein 710 [Source:RGD Symbol;Acc:1306491]
Coordinates
chr1:141866106-141870325:+
Coord C1 exon
chr1:141866106-141866280
Coord A exon
chr1:141868107-141868204
Coord C2 exon
chr1:141869958-141870325
Length
98 bp
Sequences
Splice sites
3' ss Seq
ATCTCTTTCCTCATTTCCAGGAA
3' ss Score
12.05
5' ss Seq
GAGGTACTT
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGTCATATGCACCTGCACGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAG
Seq A exon
GAATGGCTAGCATTGCTGCTAGAGCAGCTGGATGCTCCTATGCCTCACCCAGTTCAACACAGTCTTCAACTATATTCCGAGTTCAAGGCCAGCCTGAG
Seq C2 exon
ACCCCATGATGGAGCTGGCAGGCCCCGACCCCTCTGAACTTGACAACCATCAGGAGATGGAGGACTTCGAGGAAAACGCCTACACCTACAGCAGTGTGGACGGCAGCACGGAGGCCAGCGCCCTCACTGAGCAGGCCATGAAAGAGATGGCCTACTACAATGTGCTATAGCGGGCTGCTGAGTGGGGGAGGGGGGGGCGCAGGGTGAGACCCACCTACTGAGGGCTGCACCTGTGCAGTCCAGAACCAAGCTACTGCCCACTGCCCAGCCCCCCTCCCCCCCACCCTCAGTCACTTGCACCACTAGGGACCTTTAGACCAAATGGAGACTGTACTACTGTCCTTGCAGGGAGCTGGGCGCAGGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014278_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.273 C2=0.379
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000064034fB17004
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAGCAAGTTCAACCTCA
R:
GGCGTTTTCCTCGAAGTCCTC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]