RnoALTA0018826-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000013949 | Idh2
Description
isocitrate dehydrogenase (NADP(+)) 2, mitochondrial [Source:RGD Symbol;Acc:1597139]
Coordinates
chr1:141866394-141875248:-
Coord C1 exon
chr1:141875156-141875248
Coord A exon
chr1:141866495-141866765
Coord C2 exon
chr1:141866394-141866494
Length
271 bp
Sequences
Splice sites
5' ss Seq
CAAGTGTGT
5' ss Score
3.84
3' ss Seq
GGCTGTATTCTCTCCAGCAGGTA
3' ss Score
7.22
Exon sequences
Seq C1 exon
GTTTGCACAGACTCTGGAGAAGGTGTGCGTGCAGACTGTGGAGAGCGGAGCTATGACCAAGGACCTGGCTGGCTGCATCCATGGCCTCAGCAA
Seq A exon
GTACCATGACTAAGTGTCTGAGACTCTCCAAGTGACCTTGTGCCACCCTCCCCATCGCTTTCCCACCCACTATTTCCAGTTATCACGGTACCTCATCATAATGATGAGAGACGGCACATCTACGGCTCTCATGTGTTACGATCAAGTTGCCTCATCTCTCTGCCCTGCAGTTTCCGCTATAGGAATAATACCAAAGCCAGCCTCCCTGGGAGGGTCACATGAGTTACACAGCACTCAACATGTATAAGTTATTGTTTTATTATTGTTTTAG
Seq C2 exon
TGAGCCCACGTAAGTCCTTGGAAGAAGACATAAATACCCGCCACCTGTTATTGCCACGATGGCTCTCCGGGTTCCCCCTCTCTCCAGACCTGAGCCCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013949-21-24,21-23,21-22-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0018015=Iso_dh=FE(7.8=100)
A:
NA
C2:
PF0018015=Iso_dh=PD(0.3=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACAGACTCTGGAGAAGGT
R:
GTGGGCTCAGGTCTGGAGAG
Band lengths:
189-460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]