HsaEX0074259 @ hg38
Exon Skipping
Gene
ENSG00000227124 | ZNF717
Description
zinc finger protein 717 [Source:HGNC Symbol;Acc:HGNC:29448]
Coordinates
chr3:75716419-75783364:-
Coord C1 exon
chr3:75783306-75783364
Coord A exon
chr3:75741610-75741736
Coord C2 exon
chr3:75716419-75716541
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACAGCCTGGTATCATTACAGGAG
3' ss Score
5.39
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CTATGTTTCCAGTGTTCTCTGGCTGTTTCCAAGAGCTACAAGAAAAGAATAAATCTCTG
Seq A exon
GAGTTGGTGTCCTTTGAGGAGGTAGCTGTGCACTTCACCTGGGAGGAGTGGCAGGACCTGGATGATGCTCAGAGGACCCTGTACAGGGACGTGATGCTGGAGACCTACAGCAGCCTGGTATCATTGG
Seq C2 exon
GCTAAGCCTCCCTCCTTTTGGTAGAGGCTTTTTTATACCATTTGGGAACTGGTTTGGATAAGCTACCTTAATGAAGGACGACACATCCCTCCAGAGATGATAAAAGACTTTTTGTCTTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227124_MULTIEX1-5/9=3-9
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
NA
Main Skipping Isoform:
ENST00000477374fB30913
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGTTCTCTGGCTGTTTCC
R:
AAAGTCTTTTATCATCTCTGGAGGGA
Band lengths:
162-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development