HsaEX0074318 @ hg38
Exon Skipping
Gene
ENSG00000196214 | ZNF766
Description
zinc finger protein 766 [Source:HGNC Symbol;Acc:HGNC:28063]
Coordinates
chr19:52269571-52283413:+
Coord C1 exon
chr19:52269571-52269631
Coord A exon
chr19:52282111-52282237
Coord C2 exon
chr19:52283285-52283413
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAATACATCTTTTATTTTAGGGA
3' ss Score
7.88
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GCGCGCAGCCGCCTGCAGACCCGGAAGTGGATGGCGTGGAGATATGGCGCAACTGCGGCGC
Seq A exon
GGACACTTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGTGCAGAAGGCTTTATACAGGGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGG
Seq C2 exon
GAATCTGTCTTCCTGACCTGAGTATTATCTCCATGATGAAGCAAAGGACAGAGCCCTGGACTGTGGAGAATGAAATGAAAGTAGCAAAAAATCCAGATAGGTGGGAAGGTATCAAAGATATCAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196214-'0-7,'0-5,9-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.000 C2=0.157
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=100.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGACCCGGAAGTGGAT
R:
CTGTGTTGATATCTTTGATACCTTCC
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development