HsaEX0074319 @ hg38
Exon Skipping
Gene
ENSG00000196214 | ZNF766
Description
zinc finger protein 766 [Source:HGNC Symbol;Acc:HGNC:28063]
Coordinates
chr19:52282111-52296046:+
Coord C1 exon
chr19:52282111-52282237
Coord A exon
chr19:52283285-52283413
Coord C2 exon
chr19:52290066-52296046
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTCTTTTATAAACAGGAA
3' ss Score
9.33
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGACACTTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGTGCAGAAGGCTTTATACAGGGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGG
Seq A exon
GAATCTGTCTTCCTGACCTGAGTATTATCTCCATGATGAAGCAAAGGACAGAGCCCTGGACTGTGGAGAATGAAATGAAAGTAGCAAAAAATCCAGATAGGTGGGAAGGTATCAAAGATATCAACACAG
Seq C2 exon
GGAGGAGCTGTGCAGTGAGAAGCAAAGCAGGAAACAAGCCTATTACAAATCAACTTGGATTAACCTTTCAGTTACCTCTGCCAGAACTGGAGATATTTCAAGGTGAAGGGAAGATTTATGAATGTAATCAAGTTCAAAAGTTCATCAGCCACAGTTCTTCAGTTTCGCCACTTCAAAGAATTTACTCTGGGGTCAAAACCCACATATTTAATAAACATAGGAATGATTTTGTTGATTTTCCATTGCTGTCACAAGAACAGAAAGCACACATTAGGAGAAAACCTTACGAATGTAATGAGCAGGGCAAAGTCTTCAGAGTGTCTTCAAGCCTTCCTAATCATCAAGTAATCCACACTGCAGATAAACCTAACAGATGTCATGAATGTGGTAAAACCGTCAGGGACAAGTCAGGCCTCGCAGAACATTGGAGAATTCGTACAGGAGAGAAACCTTACAAATGTAAAGAGTGTGGCAAGCTCTTCAATCGAATTGCATACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196214-'9-13,'9-7,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.157 C2=0.035
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=7.3),PF0013017=C1_1=WD(100=14.1),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=PU(83.3=5.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAGGAGTGGAAATGCCT
R:
GCGAAACTGAAGAACTGTGGC
Band lengths:
257-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development