HsaEX0074329 @ hg38
Exon Skipping
Gene
ENSG00000197128 | ZNF772
Description
zinc finger protein 772 [Source:HGNC Symbol;Acc:HGNC:33106]
Coordinates
chr19:57469586-57475786:-
Coord C1 exon
chr19:57475660-57475786
Coord A exon
chr19:57475024-57475146
Coord C2 exon
chr19:57469586-57474421
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTATCTTTCCCTTAGGAC
3' ss Score
12.12
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGGCAGGTGAACTTTGAGGACGTGTTCGTGTACTTCTCCCAGGAGGAGTGGGTGCTCCTTGATGAGGCTCAGAGGCTCCTGTACCGTGATGTGATGCTGGAGAACTTTGCACTTATGGCCTCTCTGG
Seq A exon
GACATACATCTTTCATGTCCCACATAGTTGCCTCACTGGTGATGGGTAGTGAGCCCTGGGTACCTGACTGGGTGGACATGACCCTAGCTGTTGCCACAGAGACTCCAGGTGGGAGTGACCCTG
Seq C2 exon
GTTGTTGGCATGGAATGGAGGATGAAGAGATACCTTTTGAGCAGAGCTTTTCTATAGGAATGTCACAGATCAGGATTCCCAAGGGAGGTCCTTCTACTCAGAAGGCTTACCCCTGTGGGACATGTGGCCTGGTCTTAAAAGACATTTTGCACTTGGCTGAGCACCAGGAAACACACCCAGGGCAGAAACCATACATGTGTGTGCTGTGTGGGAAACAGTTCTGCTTCAGTGCAAACCTTCACCAGCACCAGAAGCAGCACAGTGGAGAGAAACCCTTTAGAAGTGATAAGAGCAGGCCCTTTCTTCTGAACAACTGTGCTGTGCAATCAATGGAGATGTCTTTTGTGACAGGGGAGGCTTGTAAGGACTTCCTAGCCAGCTCAAGCATTTTCGAGCACCATGCCCCTCACAATGAGTGGAAGCCACACAGCAACACCAAGTGTGAGGAGGCCTCTCACTGTGGAAAAAGGCATTACAAATGCAGTGAATGTGGGAAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197128-'4-4,'4-3,8-4=AN
Average complexity
ANN
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.060 C2=0.066
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0214814=zf-UBP=WD(100=24.8),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.8),PF0009621=zf-C2H2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCTCCTGTACCGTGATG
R:
TTTCTGCCCTGGGTGTGTTTC
Band lengths:
245-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Pre-implantation embryo development