HsaEX0074357 @ hg38
Exon Skipping
Gene
ENSG00000196597 | ZNF782
Description
zinc finger protein 782 [Source:HGNC Symbol;Acc:HGNC:33110]
Coordinates
chr9:96827080-96852005:-
Coord C1 exon
chr9:96851947-96852005
Coord A exon
chr9:96844890-96845016
Coord C2 exon
chr9:96827080-96827181
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTAGAAATGCGCTGTTACAGGCA
3' ss Score
3.62
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
CTGAGGCTTTACAGTTCTCTATACTCTCCCAAGAGCCACAGAAAATGAACACATTTCAG
Seq A exon
GCATCAGTGTCATTCCAGGACGTGACTGTGGAATTCAGCCAGGAGGAGTGGCAGCACATGGGCCCTGTTGAGAGGACCCTGTACAGAGATGTGATGCTGGAGAACTACAGCCACCTCGTCTCAGTGG
Seq C2 exon
GCTACTGCTTTACAAAACCAGAACTGATCTTCACATTGGAACAAGGAGAAGATCCATGGTTATTAGAGAAAGAGAAAGGATTTCTAAGCAGGAACTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196597_MULTIEX1-6/6=5-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTACAGTTCTCTATACTCTCCC
R:
CTGGGGAGTTCCTGCTTAGAA
Band lengths:
157-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development