BtaEX0041539 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008836 | ZNF782
Description
zinc finger protein 782 [Source:HGNC Symbol;Acc:HGNC:33110]
Coordinates
chr8:84856547-84934961:-
Coord C1 exon
chr8:84934911-84934961
Coord A exon
chr8:84910166-84910292
Coord C2 exon
chr8:84856547-84856642
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTAGAAATATATTGTTACAGGCA
3' ss Score
2.64
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
CTGAACCACAATTCTCTACTCTCCCAAAAGCAGAAAATGAACATAATTCAG
Seq A exon
GCATCAGTGTCATTCAAGGATGTGACTGTGGAATTCACCCAGGAAGAGTGGCATCAGATGGACTCTGCTCAGAGGACCTTGTACAGAGATGTAATGCTGGAGAACTACAGCCACCTCGTCTCAGTGG
Seq C2 exon
GGTACTGCTTTACAAAGCCAGAACTGATCTTCATGTTGGAACAAGGAGAAGATCCATGGTTATTAGAGAAAGAATTTATAAACAGAAGTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008836-'5-9,'5-5,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCACAATTCTCTACTCTCCC
R:
CTGGGGAACTTCTGTTTATAAATTCT
Band lengths:
146-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development