MmuEX6022011 @ mm10
Exon Skipping
Gene
ENSMUSG00000058291 | Zfp68
Description
zinc finger protein 68 [Source:MGI Symbol;Acc:MGI:1344427]
Coordinates
chr5:138611824-138616565:-
Coord C1 exon
chr5:138616470-138616565
Coord A exon
chr5:138612039-138612165
Coord C2 exon
chr5:138611824-138611913
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAGAAATGTGTCATTTACAGGGG
3' ss Score
6.86
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTCTAGGTGGCTGTGCTGTAGACTCTGTTACCCTGTGACGTGCTGGTGCGGGGAGTTCCATAGGGAGGACGCTCCATGTCCTGGAAGCCAGAAATG
Seq A exon
GGGCTGGTGTCATTTGAGGATATAGCTGTGGAATTCACCTGGCAGGAATGGCAGGACCTGAATGAAGGTCAGAGAACTCTCTACAGGGATGTGATGCTGGAGAACTACAGCAACTTGCTGTTCTTGG
Seq C2 exon
GGCACTGCAAAACCAAACCGGAGCTGATCTTCAATTTGGAGCAAAGACTTGGGTCATGGATTGTAGAAGCCTCACACCAGTGTGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058291-'5-9,'5-7,8-9=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAGGTGGCTGTGCTGTAGA
R:
ACACTGGTGTGAGGCTTCTACA
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types