RnoEX6063697 @ rn6
Exon Skipping
Gene
ENSRNOG00000001317 | Zfp68
Description
zinc finger protein 68 [Source:RGD Symbol;Acc:1310463]
Coordinates
chr12:18155866-18161247:+
Coord C1 exon
chr12:18155866-18155961
Coord A exon
chr12:18160911-18161037
Coord C2 exon
chr12:18161158-18161247
Length
127 bp
Sequences
Splice sites
3' ss Seq
GGAGAAATGTGTCATTACAGGGG
3' ss Score
1.76
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTCTAGGTGGCTGTGCTGTAGACTCTGTTGCCCTGTGACGTGCTGGTGCGGGGAGTTCCATAGGGAGGACGCTCGATGTCCTGGAAGCCAGAAATG
Seq A exon
GGGTTGGTGTCATTTGAGGATATAGCTGTGGAATTCACCTGGCAGGAATGGCAGGACCTGAATGAAGGTCAGAGAACTCTCTACAGGGATGTGATGCTGGAGAACTATAGCAACTTGCTGTTCTTGG
Seq C2 exon
GGCACTGTAAGACCAAACCTGAGCTGATCTTCAATTTGGAGCAAAGACTTGGGTCATGGATTGTAGAAGCCTCACACCAGAGCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001317-'4-10,'4-8,6-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTAGGTGGCTGTGCTGTAG
R:
CTGGGATGCTCTGGTGTGAGG
Band lengths:
186-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]