HsaEX0074413 @ hg19
Exon Skipping
Gene
ENSG00000197933 | ZNF823
Description
zinc finger protein 823 [Source:HGNC Symbol;Acc:30936]
Coordinates
chr19:11832135-11849788:-
Coord C1 exon
chr19:11849632-11849788
Coord A exon
chr19:11836016-11836142
Coord C2 exon
chr19:11832135-11834157
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCACATGTGGGATGTTTCAGGAC
3' ss Score
5.03
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
AAAGAGCCCGCGGAGTCTTCTCCACGCCCCTGCGCTCTGAGTCCTGGCTCTGGCGCTGAGAGAGAGACGCCCTGGAAGGTCTGTATCAGCGTCTGTCGCGCTGGGACCCACACTGGCTTTTAAGGAGGACACCCGGACACCTGGAAGCTGGGAAATG
Seq A exon
GACTCAGTGGCCTTTGAAGATGTGGCTGTGAACTTCACACAAGAGGAGTGGGCTTTGCTGGGTCCATCACAGAAGAGTCTCTACAGAAATGTCATGCAGGAAACCATTAGGAACCTGGACTGTATAG
Seq C2 exon
AAGTCATACATGTGAAATTAAAGATGACAGTCAATGTGGAGAAACTTTTGGCCAGATTCCAGATAGTATTGTGAACAAGAACACTCCTCGAGTAAATCCATGTGACAGTGGTGAGTGTGGAGAAGTCGTCTTGGGTCATTCGTCTCTTAATTGCAACATCAGAGTTGACACTGGACACAAATCATGTGAGCATCAGGAATATGGAGAGAAGCCATATACACATAAACAACGTGGGAAAGCCATCAGTCATCAGCACTCCTTCCAGACACATGAAAGGCCCCCCACCGGAAAGAAACCCTTCGATTGTAAAGAATGTGCAAAAACCTTTAGTTCTCTTGGAAACCTCCGAAGACACATGGCGGCACACCATGGAGATGGACCTTATAAATGTAAGTTGTGTGGGAAAGCCTTTGTTTGGCCCAGTTTATTTCATTTGCACGAAAGAACACACACTGGAGAGAAACCGTATGAATGTAAGCAGTGTTCTAAAGCCTTTCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197933_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF079757=C1_4=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF127602=Zn_Tnp_IS1595=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=4.6)


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGCGCTGAGAGAGAGAC
R:
ACCCAAGACGACTTCTCCACA
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)