HsaEX0074414 @ hg19
Exon Skipping
Gene
ENSG00000197933 | ZNF823
Description
zinc finger protein 823 [Source:HGNC Symbol;Acc:30936]
Coordinates
chr19:11832135-11849788:-
Coord C1 exon
chr19:11849632-11849788
Coord A exon
chr19:11835009-11835069
Coord C2 exon
chr19:11832135-11834157
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTCCTGGGTCTACCTTTTAGAAA
3' ss Score
6.91
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AAAGAGCCCGCGGAGTCTTCTCCACGCCCCTGCGCTCTGAGTCCTGGCTCTGGCGCTGAGAGAGAGACGCCCTGGAAGGTCTGTATCAGCGTCTGTCGCGCTGGGACCCACACTGGCTTTTAAGGAGGACACCCGGACACCTGGAAGCTGGGAAATG
Seq A exon
AAATGAAATGGGAGGACCAGAACATTGGAGATCAGTGCCAAAATGCCAAGAGAAATCTAAG
Seq C2 exon
AAGTCATACATGTGAAATTAAAGATGACAGTCAATGTGGAGAAACTTTTGGCCAGATTCCAGATAGTATTGTGAACAAGAACACTCCTCGAGTAAATCCATGTGACAGTGGTGAGTGTGGAGAAGTCGTCTTGGGTCATTCGTCTCTTAATTGCAACATCAGAGTTGACACTGGACACAAATCATGTGAGCATCAGGAATATGGAGAGAAGCCATATACACATAAACAACGTGGGAAAGCCATCAGTCATCAGCACTCCTTCCAGACACATGAAAGGCCCCCCACCGGAAAGAAACCCTTCGATTGTAAAGAATGTGCAAAAACCTTTAGTTCTCTTGGAAACCTCCGAAGACACATGGCGGCACACCATGGAGATGGACCTTATAAATGTAAGTTGTGTGGGAAAGCCTTTGTTTGGCCCAGTTTATTTCATTTGCACGAAAGAACACACACTGGAGAGAAACCGTATGAATGTAAGCAGTGTTCTAAAGCCTTTCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197933_MULTIEX1-2/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.171 C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF079757=C1_4=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF127602=Zn_Tnp_IS1595=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=4.6)


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTGGAAGCTGGGAAATG
R:
TCCACACTCACCACTGTCACA
Band lengths:
142-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)