BtaEX6037722 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BGT4]
Coordinates
chr7:14307682-14308678:+
Coord C1 exon
chr7:14307682-14307817
Coord A exon
chr7:14308018-14308078
Coord C2 exon
chr7:14308465-14308678
Length
61 bp
Sequences
Splice sites
3' ss Seq
AATTTTTATGTGTATTTTAGGAA
3' ss Score
10.01
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATGTTTAAGGACTCAGTGGTCTTTGAGGATGTGACTGTGAACTTCACCCTGGAAGAGTGGGCTTTACTGGATTTTTCACAGAAGAAACTCTACCGAGATGTGATGGGAGAAACCTTTAGGAACCTGGCCTCAGTAG
Seq A exon
GAACAACATGGGAAGATCATGACACTGAAGATCAGTACAGAAATCAGGGGAGAAAACTAAG
Seq C2 exon
CAGAAGTCAGAAGGCAGAGAGAATCTGTGAAGGTAAAGAGGATAGTCCCTGTGGAGAAAACGTCAACCTTATTCCAAATCACAATCCGAACAAGAAAACTCTTTTCAGAGTAAGACCACGAGGACGCAAAGTATGTGGAAAAGACCTCATGCATCATTCCTCCCATAACAGGTCCACCAGAAGTCACATTGGACACAAGCCATATGAGTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021529-'0-1,'0-0,1-1=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.810 C2=0.611
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=89.1)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=PU(7.7=2.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGGAAGAGTGGGCTTTA
R:
TCTCCACAGGGACTATCCTCT
Band lengths:
148-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]