MmuEX6076834 @ mm10
Exon Skipping
Gene
ENSMUSG00000024298 | Zfp871
Description
zinc finger protein 871 [Source:MGI Symbol;Acc:MGI:1921793]
Coordinates
chr17:32771236-32777527:-
Coord C1 exon
chr17:32777401-32777527
Coord A exon
chr17:32777157-32777217
Coord C2 exon
chr17:32771236-32776008
Length
61 bp
Sequences
Splice sites
3' ss Seq
CGACTTTAATTGTATTTTAGGGA
3' ss Score
8.74
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GAGTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCTCCCTGGAGGAGTGGGCTATGTTGAATCCATCCCAGAAGAACCTCTACAAAGATGTGATGCAGGAAACCTTGAGGAACCTGGCTTCTATAG
Seq A exon
GGAGCAGTTTGGAGCACCATATCATTGAAAATATATACCGAAACTCCTGGAAAAAACTAAG
Seq C2 exon
TGGTCAAGTGGTGGAGGGACTCTATGACTGTAAAGATGACCATCAATGTGCAGAAATCTTCGACTTCACTACACACAGTATTGTAAACCAGAACTCCTTGCCAGGAGTGTATATATGTGAAAACAGCGGATGTGCAACGGTAGTCATTGGCCATTTATCTCTAAGTGTACTTCTTAAACCTGACCCAAAGCATGAATCGTGCGAAGATCAGGAATATGGGAAGGAATTATACAATATGGAATATGGGGCCCCCTCCAGTTCTCTCACATCATTTGAGAACTATGAAAGTACTTACACTGTAGAGAGAATCTATAAAACTGAGCGTTGTGACGAAGACTATAGATATGGCCAAAATGTTGAAAAGACTTTCACTGAAGAAAAGCCCTTTGAGTGTAAGCAGTGTGGGAAGTGTTTCAGTTCCTCCAGGTATTTTCGAAGGCACGAACGACGTCATCGGGCCAAGAAATGCTATATCTGTAAGCAGTGTGGGAAAGCCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024298-'5-9,'5-8,6-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.002
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.7),PF138941=zf-C2H2_4=WD(100=4.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGCCTTTGAGGATGTGG
R:
AGAGTCCCTCCACCACTTGAC
Band lengths:
146-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types