MmuEX6076834 @ mm9

Exon Skipping

Gene

ENSMUSG00000024298 | Zfp871

Description

zinc finger protein 871 [Source:MGI Symbol;Acc:MGI:1921793]

Coordinates

chr17:32908181-32914472:-

Coord C1 exon

chr17:32914346-32914472

Coord A exon

chr17:32914102-32914162

Coord C2 exon

chr17:32908181-32912953

Length

61 bp

Sequences

Splice sites

3' ss Seq

CGACTTTAATTGTATTTTAGGGA

3' ss Score

8.74

5' ss Seq

AAGGTAATA

5' ss Score

8.49

Exon sequences

Seq C1 exon

GAGTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCTCCCTGGAGGAGTGGGCTATGTTGAATCCATCCCAGAAGAACCTCTACAAAGATGTGATGCAGGAAACCTTGAGGAACCTGGCTTCTATAG

Seq A exon

GGAGCAGTTTGGAGCACCATATCATTGAAAATATATACCGAAACTCCTGGAAAAAACTAAG

Seq C2 exon

TGGTCAAGTGGTGGAGGGACTCTATGACTGTAAAGATGACCATCAATGTGCAGAAATCTTCGACTTCACTACACACAGTATTGTAAACCAGAACTCCTTGCCAGGAGTGTATATATGTGAAAACAGCGGATGTGCAACGGTAGTCATTGGCCATTTATCTCTAAGTGTACTTCTTAAACCTGACCCAAAGCATGAATCGTGCGAAGATCAGGAATATGGGAAGGAATTATACAATATGGAATATGGGGCCCCCTCCAGTTCTCTCACATCATTTGAGAACTATGAAAGTACTTACACTGTAGAGAGAATCTATAAAACTGAGCGTTGTGACGAAGACTATAGATATGGCCAAAATGTTGAAAAGACTTTCACTGAAGAAAAGCCCTTTGAGTGTAAGCAGTGTGGGAAGTGTTTCAGTTCCTCCAGGTATTTTCGAAGGCACGAACGACGTCATCGGGCCAAGAAATGCTATATCTGTAAGCAGTGTGGGAAAGCCTTTG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000024298-'2-7,'2-6,3-7=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.002

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=100.0)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.3),PF054957=zf-CHY=WD(100=15.2),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF054957=zf-CHY=WD(100=14.1),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.5),PF0109613=TFIIS_C=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.7),PF138941=zf-C2H2_4=WD(100=4.3)

Main Inclusion Isoform:

ENSMUSP00000127178