HsaEX6094183 @ hg38
Exon Skipping
Gene
ENSG00000105708 | ZNF14
Description
zinc finger protein 14 [Source:HGNC Symbol;Acc:HGNC:12924]
Coordinates
chr19:19710471-19714487:-
Coord C1 exon
chr19:19714361-19714487
Coord A exon
chr19:19714091-19714151
Coord C2 exon
chr19:19710471-19713089
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTTCTGGGTATGCATTTTAGGAA
3' ss Score
8.04
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GACTCAGTCTCCTTTGAGGATGTGGCCGTGAACTTCACCCTGGAGGAGTGGGCTTTGCTGGATTCTTCACAGAAAAAGCTCTATGAAGATGTGATGCAGGAGACCTTCAAAAACCTGGTTTGTCTAG
Seq A exon
GAAAAAAGTGGGAAGACCAGGACATTGAAGATGACCACAGAAACCAGGGGAAAAATCGAAG
Seq C2 exon
ATGTCATATGGTTGAGAGACTCTGTGAAAGTAGAAGAGGTAGCAAATGTGGAGAAACCACTAGCCAGATGCCAAATGTTAATATCAACAAGGAAACTTTTACTGGAGCAAAACCACATGAATGCAGCTTTTGTGGAAGAGACTTCATTCATCATTCGTCCCTTAATAGGCACATGAGATCTCACACTGGACAGAAACCAAATGAGTATCAGGAATATGAAAAGCAACCATGTAAATGTAAAGCAGTTGGGAAAACCTTCAGTTATCACCACTGCTTTCGCAAACATGAAAGAACTCACACTGGAGTGAAGCCCTATGAATGTAAACAGTGTGGGAAAGCCTTTATATATTACCAGCCATTTCAAAGACATGAAAGGACTCATGCTGGACAGAAACCCTATGAATGTAAGCAATGTGGAAAAACCTTTATATATTACCAGTCTTTTCAAAAACATGCTCATACTGGAAAGAAACCCTATGAATGTAAACAGTGTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105708-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.429 C2=0.060
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF054957=zf-CHY=WD(100=14.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTGCTGGATTCTTCACA
R:
GCATCTGGCTAGTGGTTTCTCC
Band lengths:
148-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains