RnoEX0101747 @ rn6

Exon Skipping

Gene

ENSRNOG00000004947 | Zfp871

Description

zinc finger protein 871 [Source:MGI Symbol;Acc:MGI:1921793]

Coordinates

chr7:15024693-15027933:-

Coord C1 exon

chr7:15027892-15027933

Coord A exon

chr7:15027653-15027713

Coord C2 exon

chr7:15024693-15026548

Length

61 bp

Sequences

Splice sites

3' ss Seq

CTACTTTGATTGTATTTTAGGAA

3' ss Score

9.55

5' ss Seq

AAGGTAATA

5' ss Score

8.49

Exon sequences

Seq C1 exon

AAGATGTGATGCAGGAAACCTTGAGGAACCTGGCTTCTATAG

Seq A exon

GAAGCAGTTTGGAGCACCATATCATTGAAAATATATACCGAAATTCCTGGAGAAAACTAAG

Seq C2 exon

TGGTCAAGTGGTGGAGGGGCTCTATGACTGTAAAGATGACCATCAGTGTGCAGAAATCTTCGACTTCACTACACACAGTATTGTAAACCAGAACTCCTTACAAGGAGTGCACATATGTGAAAACAGTGGGTGTGCAACAGTAGTCATTGGCCATTTGTCTCTGAGTGTGCTCCTTAAGCCTGACACAGAGCGTGCGTCATACGAAGAGGACTACGGAAAGGAATTGTACAGTTCAGAGCAACTTGGGGCAGCCTCCAATTCTCTCACATCATTTGAGAACTATGAAAATACTTACACTCTACAGAGACTGTATAAAACTGAGCAATGTGATGAAGACTATCGATATGGTCAAAATGTTGAAAAGACTTTCAATGAAGACAAGCCCTTTGAGTGTAAGCAGTGTGGGAAATGTTTCAGTTCCTCCAGGTACTTTCGAAGGCATGAACGACGTCATCGTGCTAAGAAATGCTATATCTGTAAACAGTGTGGGAAAGCTTTTG

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000004947_CASSETTE1

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

In the CDS, with uncertain impact

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.002

Domain overlap (PFAM):

C1:

NO

A:

NO

C2:

PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF054957=zf-CHY=WD(100=15.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF054957=zf-CHY=WD(100=14.1),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.5),PF0109613=TFIIS_C=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.7),PF138941=zf-C2H2_4=WD(100=4.3)

Main Inclusion Isoform:

ENSRNOP00000006697