HsaEX0074433 @ hg38
Exon Skipping
Gene
ENSG00000167766 | ZNF83
Description
zinc finger protein 83 [Source:HGNC Symbol;Acc:HGNC:13158]
Coordinates
chr19:52616718-52619062:-
Coord C1 exon
chr19:52618936-52619062
Coord A exon
chr19:52617246-52617391
Coord C2 exon
chr19:52616718-52616841
Length
146 bp
Sequences
Splice sites
3' ss Seq
GACCACCTCAATATCCACAGTAC
3' ss Score
4.31
5' ss Seq
ATGGTCAGC
5' ss Score
4.01
Exon sequences
Seq C1 exon
GGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGATGTGATGTTGGAGAATTATAGGAACCTGGTCTCCCTGG
Seq A exon
TACTCAGTCCCCATGCTACTCTCACCATGTAAGGAAAGACACTTGCTTATCTGTAGGACGGCTTTCTCAGAACACAGCCTAAACCGATGTCTGCTCTGTACGATGGTGGACATACCGCTGTCTAGGAAGGATTACCAAGTGACATG
Seq C2 exon
ATGGAGTTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACCACCACCTCCGCCTCCCGGGTTCAAGCGATTCTCCCGCCTCAGCCTCAGAAGTTGCTGGAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167766_MULTIEX1-2/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF139001=GVQW=PU(92.1=83.3)
Main Inclusion Isoform:
ENST00000597161fB8246
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACATTCAGGGATGTGGCC
R:
AATTCCAGCAACTTCTGAGGCT
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development