HsaEX0074431 @ hg38
Exon Skipping
Gene
ENSG00000167766 | ZNF83
Description
zinc finger protein 83 [Source:HGNC Symbol;Acc:HGNC:13158]
Coordinates
chr19:52614658-52635153:-
Coord C1 exon
chr19:52635066-52635153
Coord A exon
chr19:52618936-52619062
Coord C2 exon
chr19:52614658-52614797
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAAATGTGTTTTCATTTCAGGGT
3' ss Score
9.4
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GATTGACTTCTAAGGACTCTTGGTACATGAGGAAGAAACCCGGAAGGGGAAGAGGAAAGCAAAGGCGTCAGGAATGGTTCTTCCTCAG
Seq A exon
GGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGATGTGATGTTGGAGAATTATAGGAACCTGGTCTCCCTGG
Seq C2 exon
GTATTTTTTCTAAATGTGAGATCAAGGAATTACCACCAAAAAAGGAGAGTAATACAGGAGAAATATTCCAGACAGTAATGTTGGAAAGACATGAAAGCCACGACATACAAGATTTTTGCTTCAGAGAAACCCAGAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167766-'33-66,'33-56,45-66
Average complexity
C2
Mappability confidence:
100%=93=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGACTTCTAAGGACTCTTGGT
R:
TTTTCTGGGTTTCTCTGAAGCA
Band lengths:
226-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development