HsaEX0074434 @ hg38
Exon Skipping
Gene
ENSG00000167766 | ZNF83
Description
zinc finger protein 83 [Source:HGNC Symbol;Acc:HGNC:13158]
Coordinates
chr19:52614672-52619062:-
Coord C1 exon
chr19:52618936-52619062
Coord A exon
chr19:52616718-52616841
Coord C2 exon
chr19:52614672-52614797
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTCTTTTTCCGAGATG
3' ss Score
4.18
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGATGTGATGTTGGAGAATTATAGGAACCTGGTCTCCCTGG
Seq A exon
ATGGAGTTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACCACCACCTCCGCCTCCCGGGTTCAAGCGATTCTCCCGCCTCAGCCTCAGAAGTTGCTGGAATTACAG
Seq C2 exon
GTATTTTTTCTAAATGTGAGATCAAGGAATTACCACCAAAAAAGGAGAGTAATACAGGAGAAATATTCCAGACAGTAATGTTGGAAAGACATGAAAGCCACGACATACAAGATTTTTGCTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167766-'45-69,'45-63,54-69=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0),PF139001=GVQW=PU(92.1=83.3)
C2:
PF139001=GVQW=PD(5.3=40.0)
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATTGACATTCAGGGATGTGGC
R:
ATGGGTTGCAGTGAGCCGAG
Band lengths:
226-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development