HsaEX0074451 @ hg19
Exon Skipping
Gene
ENSG00000197608 | ZNF841
Description
zinc finger protein 841 [Source:HGNC Symbol;Acc:27611]
Coordinates
chr19:52579297-52588131:-
Coord C1 exon
chr19:52588040-52588131
Coord A exon
chr19:52580211-52580337
Coord C2 exon
chr19:52579297-52579425
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAATGTGTTTTTCATTTCAGGGA
3' ss Score
9.8
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ATTTGACTTTTAAAGAATTAATTATATTGACTGAGAGAGAGGCCCAGGAGAGAAAGAAGAAAGAAAAGGAGCCAGGGATGGCTCTTCCTCAG
Seq A exon
GGATCTTTGACATTCAGGGATGTGGCTGTAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGTTCAGAAAGCTTTGTACAGGGACGTGATGTTGGAGAACTACAGGAACCTCGGCTTCCTGG
Seq C2 exon
GACTCTGTCTTCCTGACCTGAATATTATCTCCATGTTGGAGCAAGGGAAAGAGCCCTGGACTGTGGTGAGCCAAGTGAAAATAGCGAGGAACCCAAACTGTGGGGAATGCATGAAAGGCGTGATCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197608-'0-4,'0-3,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTATATTGACTGAGAGAGAGGCCC
R:
CGGTGATCACGCCTTTCATGC
Band lengths:
202-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)