HsaEX0074451 @ hg38
Exon Skipping
Gene
ENSG00000197608 | ZNF841
Description
zinc finger protein 841 [Source:HGNC Symbol;Acc:HGNC:27611]
Coordinates
chr19:52076044-52084878:-
Coord C1 exon
chr19:52084787-52084878
Coord A exon
chr19:52076958-52077084
Coord C2 exon
chr19:52076044-52076172
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAATGTGTTTTTCATTTCAGGGA
3' ss Score
9.8
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ATTTGACTTTTAAAGAATTAATTATATTGACTGAGAGAGAGGCCCAGGAGAGAAAGAAGAAAGAAAAGGAGCCAGGGATGGCTCTTCCTCAG
Seq A exon
GGATCTTTGACATTCAGGGATGTGGCTGTAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGTTCAGAAAGCTTTGTACAGGGACGTGATGTTGGAGAACTACAGGAACCTCGGCTTCCTGG
Seq C2 exon
GACTCTGTCTTCCTGACCTGAATATTATCTCCATGTTGGAGCAAGGGAAAGAGCCCTGGACTGTGGTGAGCCAAGTGAAAATAGCGAGGAACCCAAACTGTGGGGAATGCATGAAAGGCGTGATCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197608-'7-18,'7-15,12-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTATATTGACTGAGAGAGAGGCCC
R:
CGGTGATCACGCCTTTCATGC
Band lengths:
202-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development