HsaEX1001203 @ hg38
Exon Skipping
Gene
ENSG00000184389 | A3GALT2
Description
alpha 1,3-galactosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:30005]
Coordinates
chr1:33312052-33312890:-
Coord C1 exon
chr1:33312807-33312890
Coord A exon
chr1:33312501-33312590
Coord C2 exon
chr1:33312052-33312189
Length
90 bp
Sequences
Splice sites
3' ss Seq
CGCCCCTCAACCCACCACAGGCA
3' ss Score
5.67
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGCCTGGAAGAGAATCTTCTGGCGGCAGATCCTACTTACACTTGGCCTCTTAGGCCTGTTTCTGTATGGCCTCCCTAAATTCAG
Seq A exon
GCATCTGGAAGCCCTCATCCCCATGGGCGTCTGCCCTTCGGCCACAATGTCCCAGCTGAGAGACAACTTCACAGGTGCCCTGCGTCCCTG
Seq C2 exon
GGCCCGGCCTGAAGTTCTGACCTGTACCCCCTGGGGGGCTCCCATTATTTGGGATGGCTCTTTCGACCCAGATGTGGCCAAGCAAGAGGCTAGACAGCAGAACCTCACCATTGGGCTGACTATCTTTGCTGTAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184389-'4-2,'4-1,5-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF034148=Glyco_transf_6=PU(6.1=58.1)
C2:
PF034148=Glyco_transf_6=FE(15.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGGCAGATCCTACTTACA
R:
CCCAATGGTGAGGTTCTGCTG
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains