MmuEX6096236 @ mm10
Exon Skipping
Gene
ENSMUSG00000028794 | A3galt2
Description
alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase) [Source:MGI Symbol;Acc:MGI:2685279]
Coordinates
chr4:128761419-128762172:+
Coord C1 exon
chr4:128761419-128761502
Coord A exon
chr4:128761651-128761740
Coord C2 exon
chr4:128762035-128762172
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTCCATCATACCCAGGCT
3' ss Score
6.68
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGCCAAGAAGAGACTCCTGTGGCGGTTCTTCCTGTCTGCATTTGGTTTCTTAGGCCTGTACCATTACAGGTTCATTATTATCAG
Seq A exon
GCTCATAGAAGGCTCCATCCCCATGGGCACCTGCCCTACAGCCATAATGCCTCTGCCGAGGGACAATTTCACAGGAGTACTGCACCACTG
Seq C2 exon
GGCCCGGCCTGAAGTCCTGACCTGTACCTCTTGGGGAGCACCAATTATTTGGGATGGCACTTTCGACCCTCATGTAGCCCAGCAAGAGGCGAGACGGCGGAACCTCACCATCGGGCTGACTGTGTTTGCTGTAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028794-'1-6,'1-3,4-6=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF034148=Glyco_transf_6=PU(5.5=51.6)
C2:
PF034148=Glyco_transf_6=FE(15.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAAGAGACTCCTGTGGCG
R:
CTCTTGCTGGGCTACATGAGG
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types