RnoEX6023457 @ rn6
Exon Skipping
Gene
ENSRNOG00000005935 | A3galt2
Description
alpha 1,3-galactosyltransferase 2 [Source:RGD Symbol;Acc:727913]
Coordinates
chr5:146940269-146941025:+
Coord C1 exon
chr5:146940269-146940352
Coord A exon
chr5:146940511-146940600
Coord C2 exon
chr5:146940888-146941025
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCATGTTTGCACCCCCACAGGCT
3' ss Score
8.09
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GGCCAAGAAGAGACTCCTGTGGCGACTCTTCCTGTCTGCGTTTGGTCTCCTAGGCCTGTACCATTACTGGTTCAAGATTTTCAG
Seq A exon
GCTCTTTGAAGTGTTCATCCCCATGGGCATCTGCCCTATGGCCATCATGCCTCTGCTAAAGGACAATTTCACCGGAGTGCTGCGTCACTG
Seq C2 exon
GGCCCGGCCTGAAGTCCTGACCTGTACCTCTTGGGGAGCCCCAATTATCTGGGATGAGACCTTCGACCCACACGTAGCTGAGCGAGAGGCGAGACGGCAGAACCTTACCATTGGACTGACTGTCTTTGCGGTAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005935-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF034148=Glyco_transf_6=PU(4.8=45.2)
C2:
PF034148=Glyco_transf_6=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTCTCCTAGGCCTGTACC
R:
GCCTACCGCAAAGACAGTCAG
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]