RnoEX0001114 @ rn6
Exon Skipping
Gene
ENSRNOG00000005935 | A3galt2
Description
alpha 1,3-galactosyltransferase 2 [Source:RGD Symbol;Acc:727913]
Coordinates
chr5:146933592-146940600:+
Coord C1 exon
chr5:146933592-146933688
Coord A exon
chr5:146940269-146940352
Coord C2 exon
chr5:146940511-146940600
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCCCATTCCCACCACCCCAGGGC
3' ss Score
6.93
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
TTTCGAGCAGGTCATTTCTTCTATCTCTCTGGGCTGGAAAAAACTGCATGGCAGGTTTTCACCACTGACTTCTCCCCATGGCTCTGGAGGGACTCAG
Seq A exon
GGCCAAGAAGAGACTCCTGTGGCGACTCTTCCTGTCTGCGTTTGGTCTCCTAGGCCTGTACCATTACTGGTTCAAGATTTTCAG
Seq C2 exon
GCTCTTTGAAGTGTTCATCCCCATGGGCATCTGCCCTATGGCCATCATGCCTCTGCTAAAGGACAATTTCACCGGAGTGCTGCGTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005935-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF034148=Glyco_transf_6=PU(4.8=45.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGAGCAGGTCATTTCTTCT
R:
GCACTCCGGTGAAATTGTCCT
Band lengths:
176-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]