MmuEX6096236 @ mm9
Exon Skipping
Gene
ENSMUSG00000028794 | A3galt2
Description
alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase) [Source:MGI Symbol;Acc:MGI:2685279]
Coordinates
chr4:128438663-128439416:+
Coord C1 exon
chr4:128438663-128438746
Coord A exon
chr4:128438895-128438984
Coord C2 exon
chr4:128439279-128439416
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTCCATCATACCCAGGCT
3' ss Score
6.68
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGCCAAGAAGAGACTCCTGTGGCGGTTCTTCCTGTCTGCATTTGGTTTCTTAGGCCTGTACCATTACAGGTTCATTATTATCAG
Seq A exon
GCTCATAGAAGGCTCCATCCCCATGGGCACCTGCCCTACAGCCATAATGCCTCTGCCGAGGGACAATTTCACAGGAGTACTGCACCACTG
Seq C2 exon
GGCCCGGCCTGAAGTCCTGACCTGTACCTCTTGGGGAGCACCAATTATTTGGGATGGCACTTTCGACCCTCATGTAGCCCAGCAAGAGGCGAGACGGCGGAACCTCACCATCGGGCTGACTGTGTTTGCTGTAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028794-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF034148=Glyco_transf_6=PU(5.5=51.6)
C2:
PF034148=Glyco_transf_6=FE(15.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAAGAGACTCCTGTGGCG
R:
CTCTTGCTGGGCTACATGAGG
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: