HsaEX1003774 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr2:94848017-94853375:-
Coord C1 exon
chr2:94853202-94853375
Coord A exon
chr2:94849201-94849307
Coord C2 exon
chr2:94848017-94848154
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTGCTGTTTTGTAGGAC
3' ss Score
10.85
5' ss Seq
ACGGTACAG
5' ss Score
5.76
Exon sequences
Seq C1 exon
GCTGTCCATTGCCAGGAAGAGGCTTGTGCCGTTATTCTGCTGAAACATGGCGCCAATCCAAACCTTAAGGATATCTACGGCAACACTGCTCTCCATTATGCTGTGTATAGTGAGAGCACCTCACTGGCAGAAAAACTGCTTTCCCATGGTGCACACATTGAAGCACTGGACAAG
Seq A exon
GACAGTAATACCCCACTTTTATTCGCTATAATTTGCAAGAAAGAGAAAATGGTGGAATTTTTATTGAAAAAGAAAGCAAGTACACATGCCGTTGATAGGCTGAGACG
Seq C2 exon
GTCAGCTCTCATGCTTGCTGTATACTATGACTCACCAGGTATTGTCAGTATCCTTCTTAAGCAAAATATTGATGTCTTCGCTCAAGACATGTGTGGACGAGATGCAGAAGATTACGCTATTTCTCATCATTTGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000229089_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTGCCGTTATTCTGCTG
R:
GTCCACACATGTCTTGAGCGA
Band lengths:
251-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains