HsaEX1003810 @ hg38
Exon Skipping
Gene
ENSG00000148513 | ANKRD30A
Description
ankyrin repeat domain 30A [Source:HGNC Symbol;Acc:HGNC:17234]
Coordinates
chr10:37216181-37219897:+
Coord C1 exon
chr10:37216181-37216394
Coord A exon
chr10:37217695-37217878
Coord C2 exon
chr10:37218980-37219897
Length
184 bp
Sequences
Splice sites
3' ss Seq
ATAAGTATGTTTAATGGCAGATT
3' ss Score
3.78
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATTCAACTAGCCTATCAAAAATCTTGGATACAGTTCATTCTTGTGAAAGAGCAAGGGAACTTCAAAAAGATCACTGTGAACAACGTACAGGAAAAATGGAACAAATGAAAAAGAAGTTTTGTGTACTGAAAAAGAAACTGTCAGAAGCAAAAGAAATAAAATCACAGTTAGAGAACCAAAAAGTTAAATGGGAACAAGAGCTCTGCAGTGTGAG
Seq A exon
ATTGACTTTAAACCAAGAAGAAGAGAAGAGAAGAAATGCCGATATATTAAATGAAAAAATTAGGGAAGAATTAGGAAGAATCGAAGAGCAGCATAGGAAAGAGTTAGAAGTGAAACAACAACTTGAACAGGCTCTCAGAATACAAGATATAGAATTGAAGAGTGTAGAAAGTAATTTGAATCAG
Seq C2 exon
GTTTCTCACACTCATGAAAATGAAAATTATCTCTTACATGAAAATTGCATGTTGAAAAAGGAAATTGCCATGCTAAAACTGGAAATAGCCACACTGAAACACCAATACCAGGAAAAGGAAAATAAATACTTTGAGGACATTAAGATTTTAAAAGAAAAGAATGCTGAACTTCAGATGACCCTAAAACTGAAAGAGGAATCATTAACTAAAAGGGCATCTCAATATAGTGGGCAGCTTAAAGTTCTGATAGCTGAGAACACAATGCTCACTTCTAAATTGAAGGAAAAACAAGACAAAGAAATACTAGAGGCAGAAATTGAATCACACCATCCTAGACTGGCTTCTGCTGTACAAGACCATGATCAAATTGTGACATCAAGAAAAAGTCAAGAACCTGCTTTCCACATTGCAGGAGATGCTTGTTTGCAAAGAAAAATGAATGTTGATGTGAGTAGTACGATATATAACAATGAGGTGCTCCATCAACCACTTTCTGAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148513_MULTIEX3-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=0.145 C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF149151=CCDC144C=WD(100=95.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACAAGAGCTCTGCAGTG
R:
TGCCCACTATATTGAGATGCCC
Band lengths:
258-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains